RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB55250", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJEB55250 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6499883 6499883 PRJEB55250_P_NODE_11706_length_251_cov_0.865169_g11582_i0 PRJEB55250 11706 251 0.865169 2.17157419 Rotaria 231623 Rotifera other_Eukaryota 140 1.82e-36   NR CAF4293048.1 392030 g11582 i0 74.7 18.8247011952191 83 21 99.2 0 250 2 600 682 CAF4293048.1 unnamed protein product [Rotaria magnacalcarata] diamond 4725 140 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
26970166 26970166 PRJEB55250_P_NODE_13162_length_248_cov_0.880000_g13038_i0 PRJEB55250 13162 248 0.88 2.1824 Rotaria magnacalcarata 392030 Rotifera other_Eukaryota 121 5.959999999999999e-31   NR CAF1910845.1 392030 g13038 i0 93.5 1.5 62 4 75 0 248 63 293 354 CAF1910845.1 unnamed protein product [Rotaria magnacalcarata] diamond 372 121 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria magnacalcarata
27539228 27539228 PRJEB55250_P_NODE_7304_length_282_cov_1.148325_g7180_i0 PRJEB55250 7304 282 1.148325 3.2382765 Adineta steineri 433720 Rotifera other_Eukaryota 43.9 0.00608   NR CAF1209424.1 433720 g7180 i0 50 0.595744680851064 56 21 54.3 2 280 128 17 70 CAF1209424.1 unnamed protein product [Adineta steineri] diamond 168 43.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta steineri
31835024 31835024 PRJEB55250_P_NODE_9517_length_265_cov_1.208333_g9393_i0 PRJEB55250 9517 265 1.208333 3.20208245 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 65.9 3.31e-10   NR CAF4057732.1 2762511 g9393 i0 59.6 1.64150943396226 47 19 53.2 0 241 101 254 300 CAF4057732.1 unnamed protein product, partial [Rotaria sp. Silwood1] diamond 435 65.9 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;