RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB55250", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJEB55250 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16698499 16698499 PRJEB55250_P_NODE_4034_length_342_cov_1.144981_g3910_i0 PRJEB55250 4034 342 1.144981 3.91583502 Spizellomyces punctatus DAOM BR117 645134 Fungi Fungi 150 7.089999999999998e-42   NR XP_016612010.1 645134 g3910 i0 66.7 5.25438596491228 99 33 86.8 0 40 336 3 101 XP_016612010.1 guanine nucleotide-binding protein subunit beta-2-like 1 [Spizellomyces punctatus DAOM BR117] diamond 1797 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
21798578 21798578 PRJEB55250_P_NODE_5738_length_299_cov_2.300885_g5614_i0 PRJEB55250 5738 299 2.300885 6.87964615 Eukaryota 2759 Fungi Fungi 153 8.439999999999998e-43   NR KAI8811791.1 109936 g5614 i0 75 2.8695652173913 96 24 96.3 0 289 2 1 96 KAI8811791.1 60S ribosomal protein L3 [Cladochytrium replicatum] diamond 858 153 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium replicatum
27886407 27886407 PRJEB55250_P_NODE_9105_length_268_cov_1.384615_g8981_i0 PRJEB55250 9105 268 1.384615 3.7107682 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 128 1.23e-33   NR KAH9256427.1 1357716 g8981 i0 60.7 0.996268656716418 89 35 99.6 0 267 1 214 302 KAH9256427.1 hypothetical protein BASA81_005341 [Batrachochytrium salamandrivorans] diamond 267 128 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
28328369 28328369 PRJEB55250_P_NODE_12646_length_249_cov_0.875000_g12522_i0 PRJEB55250 12646 249 0.875 2.17875 Chytridium lagenaria 64509 Fungi Fungi 53.9 3.09e-6   NR KAI8832551.1 64509 g12522 i0 44.4 0.759036144578313 63 35 75.9 0 60 248 110 172 KAI8832551.1 hypothetical protein BC829DRAFT_89324 [Chytridium lagenaria] diamond 189 53.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium lagenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;