RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB55250", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB55250 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20522832 20522832 PRJEB55250_P_NODE_8557_length_272_cov_1.442211_g8433_i0 PRJEB55250 8557 272 1.442211 3.92281392 FCB group 1783270 Bacteria Bacteria 147 8.79e-42   NR HVE78250.1 2026741 g8433 i0 81.6 17.6360294117647 87 16 96 0 270 10 162 248 HVE78250.1 phytanoyl-CoA dioxygenase family protein [Gemmatimonadaceae bacterium] diamond 4797 148 0.993243243243243 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28454973 28454973 PRJEB55250_P_NODE_5946_length_295_cov_2.081081_g5822_i0 PRJEB55250 5946 295 2.081081 6.13918895 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 80.1 4.86e-16   NR MBA2707478.1 2026741 g5822 i0 51.8 0.84406779661017 83 40 84.4 0 1 249 125 207 MBA2707478.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 249 80.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;