RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB55250" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJEB55250 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16698606 16698606 PRJEB55250_P_NODE_9054_length_268_cov_1.579487_g8930_i0 PRJEB55250 9054 268 1.579487 4.23302516 Heterostelium album 2086695 Evosea other_Eukaryota 174 5.02e-39   NTclustered gi|1160555008|ref|XM_020573329.1| 670386 g8930 i0 83.957 4.26119402985075 187 24 70 3 23 209 174 354 Polysphondylium pallidum PN500 annexin VII partial mRNA blastn 1142 174 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
20118391 20118391 PRJEB55250_P_NODE_3676_length_354_cov_1.330961_g3552_i0 PRJEB55250 3676 354 1.330961 4.71160194 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 202 1.4e-57   NR XP_004362985.1 261658 g3552 i0 80.3 4.93220338983051 117 23 99.2 0 2 352 1019 1135 XP_004362985.1 protein phosphatase 2C [Cavenderia fasciculata] diamond 1746 203 0.995073891625616 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
20522698 20522698 PRJEB55250_P_NODE_17317_length_209_cov_5.367647_g17193_i0 PRJEB55250 17317 209 5.367647 11.21838223 Centropyxis aerophila 2898874 Tubulinea other_Eukaryota 315 2.12e-81   NTclustered gi|2156866368|gb|OL677465.1| 2898874 g17193 i0 99.422 30.1913875598086 173 1 83 0 37 209 920 748 Centropyxis aerophila voucher R61 small subunit ribosomal RNA gene, partial sequence blastn 6310 315 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis aerophila
21798514 21798514 PRJEB55250_P_NODE_1818_length_479_cov_11.201970_g1695_i0 PRJEB55250 1818 479 11.20197 53.6574363 Centropyxis aerophila 2898874 Tubulinea other_Eukaryota 885 0   NTclustered gi|2156866368|gb|OL677465.1| 2898874 g1695 i0 100 45.6868475991649 479 0 100 0 1 479 751 273 Centropyxis aerophila voucher R61 small subunit ribosomal RNA gene, partial sequence blastn 21884 885 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis aerophila
28953464 28953464 PRJEB55250_P_NODE_7868_length_277_cov_1.509804_g7744_i0 PRJEB55250 7868 277 1.509804 4.18215708 Dictyostelium 5782 Evosea other_Eukaryota 85.1 6.72e-18   NR XP_003286849.1 5786 g7744 i0 45.1 1.96028880866426 91 49 97.5 1 4 273 57 147 XP_003286849.1 uncharacterized protein DICPUDRAFT_31606 [Dictyostelium purpureum] diamond 543 85.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31638543 31638543 PRJEB55250_P_NODE_6296_length_290_cov_1.262673_g6172_i0 PRJEB55250 6296 290 1.262673 3.6617517 Eumycetozoa 142796 Evosea other_Eukaryota 53.1 1.5e-5   NR KAF2072336.1 133409 g6172 i0 34.5 2.78275862068966 87 57 90 0 12 272 921 1007 KAF2072336.1 hypothetical protein CYY_006349 [Polysphondylium violaceum] diamond 807 53.5 0.992523364485981 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;