RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB55122" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB55122 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21797554 21797554 PRJEB55122_P_NODE_25798_length_210_cov_2.260870_g25401_i0 PRJEB55122 25798 210 2.26087 4.747827 Dictyostelium discoideum 44689 Evosea other_Eukaryota 117 6.44e-22   NTclustered gi|66802102|ref|XM_629843.1| 352472 g25401 i0 79.878 1.2952380952381 164 29 77 4 42 203 558 397 Dictyostelium discoideum AX4 proteasome subunit alpha type 2 (psmA2) mRNA, complete cds blastn 272 117 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
31645258 31645258 PRJEB55122_P_NODE_25117_length_214_cov_1.260606_g24720_i0 PRJEB55122 25117 214 1.260606 2.69769684 Dictyostelium purpureum 5786 Evosea other_Eukaryota 62 1.33e-9   NR XP_003291237.1 5786 g24720 i0 57.7 2.03271028037383 71 29 99.5 1 2 214 25 94 XP_003291237.1 uncharacterized protein DICPUDRAFT_38686 [Dictyostelium purpureum] diamond 435 62 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;