RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB55122", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_phylum 1

  • Chloroflexota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJEB55122 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17569608 17569608 PRJEB55122_P_NODE_32594_length_182_cov_1.563910_g32197_i0 PRJEB55122 32594 182 1.56391 2.8463162 Herpetosiphon 64 Bacteria Bacteria 326 8.260000000000001e-85   NTclustered gi|470482680|ref|NR_076546.1| 65 g32197 i0 99.441 47.5054945054945 179 1 98 0 1 179 394 572 Herpetosiphon aurantiacus strain DSM 785 23S ribosomal RNA gene, complete sequence blastn 8646 326 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus
27191487 27191487 PRJEB55122_P_NODE_42222_length_163_cov_0.912281_g41825_i0 PRJEB55122 42222 163 0.912281 1.48701803 Chloroflexota bacterium 2026724 Bacteria Bacteria 62 7.54e-10   NR MBI3748492.1 2026724 g41825 i0 78.4 0.680981595092024 37 5 68.1 1 113 3 1 34 MBI3748492.1 prepilin peptidase [Chloroflexota bacterium] diamond 111 62 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28139302 28139302 PRJEB55122_P_NODE_7045_length_524_cov_2.589474_g6656_i0 PRJEB55122 7045 524 2.589474 13.56884376 Anaerolineales bacterium 2073117 Bacteria Bacteria 48.5 0.00514   NR MFL2650889.1 2073117 g6656 i0 31.8 0.629770992366412 110 68 63 3 471 142 251 353 MFL2650889.1 ArnT family glycosyltransferase [Anaerolineales bacterium] diamond 330 48.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
28928360 28928360 PRJEB55122_P_NODE_16208_length_286_cov_1.316456_g15811_i0 PRJEB55122 16208 286 1.316456 3.76506416 Anaerolineales bacterium 2073117 Bacteria Bacteria 43.1 0.0435   NR MBL8097376.1 2073117 g15811 i0 35.8 0.555944055944056 53 31 54.5 2 82 237 32 82 MBL8097376.1 polysulfide reductase NrfD [Anaerolineales bacterium] diamond 159 43.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
29149811 29149811 PRJEB55122_P_NODE_31309_length_187_cov_1.130435_g30912_i0 PRJEB55122 31309 187 1.130435 2.11391345 Anaerolineae bacterium 2052143 Bacteria Bacteria 59.7 1.85e-8   NR HNT74674.1 2052143 g30912 i0 48 3.68983957219251 50 26 80.2 0 10 159 441 490 HNT74674.1 SDR family NAD(P)-dependent oxidoreductase [Anaerolineae bacterium] diamond 690 59.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
29932274 29932274 PRJEB55122_P_NODE_37651_length_168_cov_0.873950_g37254_i0 PRJEB55122 37651 168 0.87395 1.468236 Bacteria 2 Bacteria Bacteria 44.7 0.00286   NR MEO8437568.1 2026724 g37254 i0 54.5 2.66071428571429 55 18 91.1 3 16 168 85 136 MEO8437568.1 MerR family transcriptional regulator [Chloroflexota bacterium] diamond 447 44.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31044972 31044972 PRJEB55122_P_NODE_15375_length_297_cov_1.673387_g14978_i0 PRJEB55122 15375 297 1.673387 4.96995939 Candidatus Promineifilaceae bacterium 3085104 Bacteria Bacteria 43.9 0.0212   NR MDX1416048.1 3085104 g14978 i0 31.9 0.474747474747475 47 32 47.5 0 83 223 2 48 MDX1416048.1 cytochrome c biogenesis protein CcdA [Candidatus Promineifilaceae bacterium] diamond 141 43.9 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae   Candidatus Promineifilaceae bacterium
32436660 32436660 PRJEB55122_P_NODE_41899_length_163_cov_2.078947_g41502_i0 PRJEB55122 41899 163 2.078947 3.38868361 Dehalococcoidales bacterium 2026733 Bacteria Bacteria 42 0.0243   NR MDA8188059.1 2026733 g41502 i0 54.3 0.644171779141104 35 14 60.7 2 139 41 651 685 MDA8188059.1 ATP-dependent DNA helicase [Dehalococcoidales bacterium] diamond 105 42 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales     Dehalococcoidales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;