RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB55122" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB55122 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10324097 10324097 PRJEB55122_P_NODE_32829_length_181_cov_1.575758_g32432_i0 PRJEB55122 32829 181 1.575758 2.85212198 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|1027949921|ref|XR_001678647.1| 31271 g32432 i0 78.261 1.28176795580111 92 16 50 3 92 181 1465 1376 Plasmodium chabaudi chabaudi 28S ribosomal RNA (PCHAS_0521461), rRNA blastn 232 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
16294476 16294476 PRJEB55122_P_NODE_533_length_1933_cov_3.856157_g449_i0 PRJEB55122 533 1933 3.856157 74.53951481 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 60.2 0.001   NTclustered gi|2785757308|ref|XM_067215750.1| 5824 g449 i0 100 0.033109156751164 32 0 2 0 1216 1247 883 914 Plasmodium brasilianum Cg2 protein (MKS88_000468), partial mRNA blastn 64 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
26646699 26646699 PRJEB55122_P_NODE_14861_length_305_cov_1.218750_g14464_i0 PRJEB55122 14861 305 1.21875 3.7171875 root 1 Root_unresolved Root_unresolved 70.1 1.84e-11   NR XP_002139125.1 441375 g14464 i0 48.1 2.74426229508197 79 39 75.7 1 246 16 197 275 XP_002139125.1 myristoyl-CoA-protein n-myristoyltransferase domain-containing protein [Cryptosporidium muris RN66] diamond 837 70.5 0.994326241134752 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
29528376 29528376 PRJEB55122_P_NODE_43730_length_162_cov_0.920354_g43333_i0 PRJEB55122 43730 162 0.920354 1.49097348 Sarcocystis calchasi 1344799 SAR_Eukaryotes SAR_Eukaryotes 66.6 4.54e-11   NR CAL7863079.1 1344799 g43333 i0 52.8 3.87037037037037 53 25 98.1 0 2 160 106 158 CAL7863079.1 unnamed protein product [Sarcocystis calchasi] diamond 627 66.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;