RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB55122", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB55122 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2267021 2267021 PRJEB55122_P_NODE_29622_length_193_cov_1.687500_g29225_i0 PRJEB55122 29622 193 1.6875 3.256875 Bacteria 2 Bacteria Bacteria 93.5 9.8e-15   NTclustered gi|2874254114|emb|OY970199.1| 194844 g29225 i0 80.672 7.52331606217617 119 23 62 0 70 188 1998659 1998541 MAG: uncultured Acidobacteriaceae bacterium isolate MFD04463.bin.1.15 genome assembly, chromosome: 1 blastn 1452 93.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
27697380 27697380 PRJEB55122_P_NODE_33684_length_178_cov_1.612403_g33287_i0 PRJEB55122 33684 178 1.612403 2.87007734 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 103 5.6999999999999986e-24   NR HEX8264627.1 2283092 g33287 i0 86.2 0.97752808988764 58 8 97.8 0 176 3 490 547 HEX8264627.1 carboxypeptidase regulatory-like domain-containing protein [Pyrinomonadaceae bacterium] diamond 174 103 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
31202133 31202133 PRJEB55122_P_NODE_35175_length_173_cov_1.677419_g34778_i0 PRJEB55122 35175 173 1.677419 2.90193487 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 50.8 1.96e-5   NR MDR3737318.1 2052142 g34778 i0 44.6 0.971098265895954 56 30 95.4 1 170 6 226 281 MDR3737318.1 hypothetical protein [Acidobacteriaceae bacterium] diamond 168 50.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;