RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB55122", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB55122 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17569611 17569611 PRJEB55122_P_NODE_34874_length_174_cov_1.664000_g34477_i0 PRJEB55122 34874 174 1.664 2.89536 Breznakiellaceae 2951104 Bacteria Bacteria 200 4.939999999999998e-47   NTclustered gi|470488994|ref|NR_076899.1| 215591 g34477 i0 87.429 379.798850574713 175 20 100 2 1 174 903 1076 Treponema caldarium strain H1 23S ribosomal RNA, complete sequence blastn 66085 200 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium
27981221 27981221 PRJEB55122_P_NODE_43685_length_162_cov_0.920354_g43288_i0 PRJEB55122 43685 162 0.920354 1.49097348 Treponema sp. 166 Bacteria Bacteria 90.9 1.33e-19   NR MFC2330553.1 166 g43288 i0 75 0.962962962962963 52 13 96.3 0 158 3 512 563 MFC2330553.1 ATP-dependent RNA helicase [Treponema sp.] diamond 156 90.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;