RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB55122", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB55122 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26970161 26970161 PRJEB55122_P_NODE_38782_length_167_cov_0.881356_g38385_i0 PRJEB55122 38782 167 0.881356 1.47186452 Anaeromyxobacteraceae bacterium 2510643 Bacteria Bacteria 41.2 0.0471   NR HET9599580.1 2510643 g38385 i0 34.7 0.880239520958084 49 32 88 0 19 165 351 399 HET9599580.1 POTRA domain-containing protein [Anaeromyxobacteraceae bacterium] diamond 147 41.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
31740147 31740147 PRJEB55122_P_NODE_40297_length_165_cov_0.905172_g39900_i0 PRJEB55122 40297 165 0.905172 1.4935338 Myxococcota bacterium 2818507 Bacteria Bacteria 42.4 0.0176   NR MEM7402488.1 2818507 g39900 i0 46.2 0.709090909090909 39 21 70.9 0 139 23 1 39 MEM7402488.1 DUF2608 domain-containing protein [Myxococcota bacterium] diamond 117 42.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;