RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB55122", tax_kingdom = "Fungi" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB55122 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21797828 21797828 PRJEB55122_P_NODE_33338_length_179_cov_2.400000_g32941_i0 PRJEB55122 33338 179 2.4 4.296 Radiomyces spectabilis 64574 Fungi Fungi 143 8.75e-30   NTclustered gi|2323704695|ref|XM_051572549.1| 64574 g32941 i0 81.356 8.10614525139665 177 31 98 2 2 177 284 109 Radiomyces spectabilis 40S ribosomal protein S13 (BYT42DRAFT_641308), partial mRNA blastn 1451 143 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Radiomycetaceae Radiomyces Radiomyces spectabilis
23944061 23944061 PRJEB55122_P_NODE_26799_length_205_cov_8.647436_g26402_i0 PRJEB55122 26799 205 8.647436 17.7272438 Fungi 4751 Fungi Fungi 379 7.229999999999999e-101   NTclustered gi|658131632|emb|HF968958.1| 4874 g26402 i0 100 147.19512195122 205 0 100 0 1 205 2197 1993 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 30175 379 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;