RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB55122" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJEB55122 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27444698 27444698 PRJEB55122_P_NODE_21623_length_236_cov_1.112299_g21226_i0 PRJEB55122 21623 236 1.112299 2.62502564 Chlamydomonas sp. UWO 241 1653778 Plants Plants 86.3 3.38e-18   NR KAG1673219.1 1653778 g21226 i0 64.4 3.97881355932203 59 21 75 0 236 60 199 257 KAG1673219.1 hypothetical protein FOA52_013099 [Chlamydomonas sp. UWO 241] diamond 939 86.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. UWO 241
28321677 28321677 PRJEB55122_P_NODE_41626_length_164_cov_0.904348_g41229_i0 PRJEB55122 41626 164 0.904348 1.48313072 Eukaryota 2759 Plants Plants 54.7 7.75e-7   NR KAL4421914.1 554058 g41229 i0 51.3 1.35365853658537 39 19 71.3 0 154 38 915 953 KAL4421914.1 hypothetical protein ABPG77_005198 [Micractinium sp. CCAP 211/92] diamond 222 55.1 0.992740471869329 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92
28353262 28353262 PRJEB55122_P_NODE_38826_length_167_cov_0.881356_g38429_i0 PRJEB55122 38826 167 0.881356 1.47186452 Picochlorum 249344 Plants Plants 43.1 0.00992   NR WPT14467.1 1470871 g38429 i0 47.1 1.22155688622754 34 18 61.1 0 4 105 623 656 WPT14467.1 Ribonuclease TUDOR 1 [Picochlorum sp. SENEW3] diamond 204 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. SENEW3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;