RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB55122", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJEB55122 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7773657 7773657 PRJEB55122_P_NODE_37107_length_169_cov_0.866667_g36710_i0 PRJEB55122 37107 169 0.866667 1.46466723 Neobodo designis 312471 Euglenozoa other_Eukaryota 302 1.27e-77   NTclustered gi|1172045910|gb|KY859412.1| 312471 g36710 i0 98.817 57.5562130177515 169 2 100 0 1 169 669 837 Neobodo designis breed flagellate small subunit ribosomal RNA gene, partial sequence blastn 9727 302 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo designis
29717446 29717446 PRJEB55122_P_NODE_39690_length_166_cov_0.888889_g39293_i0 PRJEB55122 39690 166 0.888889 1.47555574 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 69.7 4.05e-12   NR EPY19564.1 28005 g39293 i0 68.5 3.90361445783133 54 15 97.6 1 165 4 421 472 EPY19564.1 3-oxoacid CoA-transferase [Strigomonas culicis] diamond 648 69.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
30381528 30381528 PRJEB55122_P_NODE_42773_length_163_cov_0.912281_g42376_i0 PRJEB55122 42773 163 0.912281 1.48701803 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 45.1 0.00161   NR EPY31977.1 28005 g42376 i0 83.3 0.441717791411043 24 4 44.2 0 3 74 201 224 EPY31977.1 small subunit ribosomal protein S8e [Strigomonas culicis] diamond 72 45.1 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;