RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB55122" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJEB55122 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30886645 30886645 PRJEB55122_P_NODE_22554_length_229_cov_1.988889_g22157_i0 PRJEB55122 22554 229 1.988889 4.55455581 Patescibacteria group bacterium 2052139 Bacteria Bacteria 43.5 0.00747   NR MEK7070941.1 2052139 g22157 i0 43.9 2.24017467248908 41 23 53.7 0 181 59 88 128 MEK7070941.1 hypothetical protein [Patescibacteria group bacterium] diamond 513 43.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31107675 31107675 PRJEB55122_P_NODE_35815_length_171_cov_1.557377_g35418_i0 PRJEB55122 35815 171 1.557377 2.66311467 Candidatus Dependentiae bacterium 2030827 Bacteria Bacteria 62.8 3.67e-11   NR RTL06915.1 2030827 g35418 i0 61.4 0.771929824561403 44 17 77.2 0 169 38 40 83 RTL06915.1 MAG: hypothetical protein EKK58_03725 [Candidatus Dependentiae bacterium] diamond 132 62.8 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;