RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB50765" and tax_phylum = "Bacillota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB50765 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9046790 9046790 PRJEB50765_P_NODE_2888_length_163_cov_1.111111_g2864_i0 PRJEB50765 2888 163 1.111111 1.81111093 Clostridium baratii 1561 Bacteria Bacteria 99 1.72e-16   NTclustered gi|2695239789|gb|CP124319.1| 1561 g2864 i0 88.889 44.2331288343558 81 8 49 1 84 163 2674388 2674468 Clostridium baratii strain C110 chromosome, complete genome blastn 7210 99 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium baratii
22668241 22668241 PRJEB50765_P_NODE_2798_length_166_cov_0.899225_g2774_i0 PRJEB50765 2798 166 0.899225 1.4927135 root 1 Root_unresolved Root_unresolved 252 1.28e-62   NTclustered gi|1880693168|gb|MT807336.1| 1306 g2774 i0 93.976 103 166 10 100 0 1 166 247 82 Streptococcus sp. strain 365.2 16S ribosomal RNA gene, partial sequence blastn 17098 252 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp.
28732236 28732236 PRJEB50765_P_NODE_1827_length_216_cov_1.296089_g1803_i0 PRJEB50765 1827 216 1.296089 2.79955224 Bacteria 2 Bacteria Bacteria 45.1 0.00423   NR WP_027086007.1 400776 g1803 i0 44.6 2.45833333333333 56 31 77.8 0 31 198 854 909 WP_027086007.1 carboxypeptidase regulatory-like domain-containing protein [Cohnella panacarvi] diamond 531 45.1 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Cohnella Cohnella panacarvi
31132350 31132350 PRJEB50765_P_NODE_2475_length_179_cov_1.352113_g2451_i0 PRJEB50765 2475 179 1.352113 2.42028227 Bacillota 1239 Bacteria Bacteria 93.2 9.42e-21   NR WP_328207969.1 1422 g2451 i0 81.4 57.2011173184358 59 11 98.9 0 1 177 101 159 WP_328207969.1 Hsp70 family protein, partial [Geobacillus stearothermophilus] diamond 10239 93.6 0.995726495726496 Bacteria   Bacillati Bacillota Bacilli Bacillales Anoxybacillaceae Geobacillus Geobacillus stearothermophilus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;