contig_metadata
10 rows where bioproject = "PRJEB50765" and tax_kingdom = "Bacillati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 991330 | 991330 | PRJEB50765_P_NODE_2881_length_163_cov_1.277778_g2857_i0 | PRJEB50765 | 2881 | 163 | 1.277778 | 2.08277814 | Cutibacterium | 1912216 | Bacteria | Bacteria | 257 | 2.68e-64 | NTclustered | gi|1446500593|gb|CP031442.1| | 1747 | g2857 | i0 | 95.122 | 272.331288343558 | 164 | 6 | 100 | 2 | 1 | 163 | 56714 | 56876 | Cutibacterium acnes strain KCOM 1315 chromosome, complete genome | blastn | 44390 | 257 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Propionibacteriaceae | Cutibacterium | Cutibacterium acnes | ||
| 9046790 | 9046790 | PRJEB50765_P_NODE_2888_length_163_cov_1.111111_g2864_i0 | PRJEB50765 | 2888 | 163 | 1.111111 | 1.81111093 | Clostridium baratii | 1561 | Bacteria | Bacteria | 99 | 1.72e-16 | NTclustered | gi|2695239789|gb|CP124319.1| | 1561 | g2864 | i0 | 88.889 | 44.2331288343558 | 81 | 8 | 49 | 1 | 84 | 163 | 2674388 | 2674468 | Clostridium baratii strain C110 chromosome, complete genome | blastn | 7210 | 99 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Clostridium baratii | ||
| 20520448 | 20520448 | PRJEB50765_P_NODE_2257_length_189_cov_1.026316_g2233_i0 | PRJEB50765 | 2257 | 189 | 1.026316 | 1.93973724 | [Actinomadura] parvosata | 1955412 | Bacteria | Bacteria | 54.7 | 0.005 | NTclustered | gi|1162989368|gb|CP017717.1| | 1909395 | g2233 | i0 | 100 | 0.153439153439153 | 29 | 0 | 15 | 0 | 19 | 47 | 9870514 | 9870486 | [Actinomadura] parvosata subsp. kistnae strain ATCC 55076 chromosome, complete genome | blastn | 29 | 54.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Streptosporangiales | Streptosporangiaceae | Nonomuraea | [Actinomadura] parvosata | ||
| 22668241 | 22668241 | PRJEB50765_P_NODE_2798_length_166_cov_0.899225_g2774_i0 | PRJEB50765 | 2798 | 166 | 0.899225 | 1.4927135 | root | 1 | Root_unresolved | Root_unresolved | 252 | 1.28e-62 | NTclustered | gi|1880693168|gb|MT807336.1| | 1306 | g2774 | i0 | 93.976 | 103 | 166 | 10 | 100 | 0 | 1 | 166 | 247 | 82 | Streptococcus sp. strain 365.2 16S ribosomal RNA gene, partial sequence | blastn | 17098 | 252 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus sp. | ||
| 25217449 | 25217449 | PRJEB50765_P_NODE_2500_length_178_cov_1.021277_g2476_i0 | PRJEB50765 | 2500 | 178 | 1.021277 | 1.81787306 | Microbacteriaceae | 85023 | Bacteria | Bacteria | 283 | 4.909999999999999e-72 | NTclustered | gi|2067841284|gb|CP076352.1| | 33013 | g2476 | i0 | 95.506 | 203.674157303371 | 178 | 7 | 100 | 1 | 1 | 178 | 2138059 | 2137883 | Clavibacter michiganensis subsp. michiganensis strain VQ143 chromosome, complete genome | blastn | 36254 | 283 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Clavibacter | Clavibacter michiganensis | ||
| 28044268 | 28044268 | PRJEB50765_P_NODE_2645_length_172_cov_1.140741_g2621_i0 | PRJEB50765 | 2645 | 172 | 1.140741 | 1.96207452 | Coriobacteriales bacterium | 2478480 | Bacteria | Bacteria | 47.8 | 2.47e-4 | NR | MDR3315660.1 | 2478480 | g2621 | i0 | 53.1 | 1.11627906976744 | 32 | 15 | 55.8 | 0 | 172 | 77 | 459 | 490 | MDR3315660.1 RICIN domain-containing protein [Coriobacteriales bacterium] | diamond | 192 | 47.8 | 1 | Bacteria | Bacillati | Actinomycetota | Coriobacteriia | Coriobacteriales | Coriobacteriales bacterium | ||||
| 28732236 | 28732236 | PRJEB50765_P_NODE_1827_length_216_cov_1.296089_g1803_i0 | PRJEB50765 | 1827 | 216 | 1.296089 | 2.79955224 | Bacteria | 2 | Bacteria | Bacteria | 45.1 | 0.00423 | NR | WP_027086007.1 | 400776 | g1803 | i0 | 44.6 | 2.45833333333333 | 56 | 31 | 77.8 | 0 | 31 | 198 | 854 | 909 | WP_027086007.1 carboxypeptidase regulatory-like domain-containing protein [Cohnella panacarvi] | diamond | 531 | 45.1 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Cohnella | Cohnella panacarvi | ||
| 31132350 | 31132350 | PRJEB50765_P_NODE_2475_length_179_cov_1.352113_g2451_i0 | PRJEB50765 | 2475 | 179 | 1.352113 | 2.42028227 | Bacillota | 1239 | Bacteria | Bacteria | 93.2 | 9.42e-21 | NR | WP_328207969.1 | 1422 | g2451 | i0 | 81.4 | 57.2011173184358 | 59 | 11 | 98.9 | 0 | 1 | 177 | 101 | 159 | WP_328207969.1 Hsp70 family protein, partial [Geobacillus stearothermophilus] | diamond | 10239 | 93.6 | 0.995726495726496 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Anoxybacillaceae | Geobacillus | Geobacillus stearothermophilus | ||
| 31993337 | 31993337 | PRJEB50765_P_NODE_3038_length_158_cov_1.256198_g3014_i0 | PRJEB50765 | 3038 | 158 | 1.256198 | 1.98479284 | Cyanobacteriota bacterium | 2847862 | Bacteria | Bacteria | 80.5 | 2.81e-16 | NR | MBX9694561.1 | 2847862 | g3014 | i0 | 75 | 0.987341772151899 | 52 | 13 | 98.7 | 0 | 2 | 157 | 24 | 75 | MBX9694561.1 hypothetical protein [Cyanobacteriota bacterium] | diamond | 156 | 80.5 | 1 | Bacteria | Cyanobacteriota/Melainabacteria group | Bacillati | Cyanobacteriota | Cyanobacteriota bacterium | |||||
| 32745225 | 32745225 | PRJEB50765_P_NODE_3040_length_158_cov_0.958678_g3016_i0 | PRJEB50765 | 3040 | 158 | 0.958678 | 1.51471124 | PVC group | 1783257 | Bacteria | Bacteria | 73.6 | 7.05e-14 | NR | MDA1175223.1 | 2026724 | g3016 | i0 | 64.7 | 9.6645569620253209 | 51 | 18 | 96.8 | 0 | 6 | 158 | 132 | 182 | MDA1175223.1 aldolase/citrate lyase family protein [Chloroflexota bacterium] | diamond | 1527 | 73.9 | 0.995940460081191 | Bacteria | Bacillati | Chloroflexota | Chloroflexota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;