RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB50765" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJEB50765 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20520442 20520442 PRJEB50765_P_NODE_1197_length_284_cov_1.615385_g1173_i0 PRJEB50765 1197 284 1.615385 4.5876934 Coccomyxa subellipsoidea C-169 574566 Plants Plants 138 2.629999999999999e-38   NR XP_005643653.1 574566 g1173 i0 69.1 19.8380281690141 94 29 99.3 0 2 283 106 199 XP_005643653.1 60S ribosomal protein L7 [Coccomyxa subellipsoidea C-169] diamond 5634 138 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
28517982 28517982 PRJEB50765_P_NODE_3207_length_153_cov_1.344828_g3183_i0 PRJEB50765 3207 153 1.344828 2.05758684 Chlamydomonas eustigma 1157962 Plants Plants 91.3 1.34e-20   NR GAX80767.1 1157962 g3183 i0 80 1.96078431372549 50 10 98 0 3 152 156 205 GAX80767.1 hypothetical protein CEUSTIGMA_g8202.t1 [Chlamydomonas eustigma] diamond 300 91.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
29149786 29149786 PRJEB50765_P_NODE_2249_length_189_cov_1.684211_g2225_i0 PRJEB50765 2249 189 1.684211 3.18315879 Trebouxia sp. C 2796353 Plants Plants 64.7 1.6e-11   NR KAL0042167.1 2905653 g2225 i0 58.7 2.31746031746032 46 19 73 0 147 10 3 48 KAL0042167.1 hypothetical protein WJX77_005300 [Trebouxia sp. C0004] diamond 438 64.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
30500762 30500762 PRJEB50765_P_NODE_3013_length_159_cov_0.950820_g2989_i0 PRJEB50765 3013 159 0.95082 1.5118038 Eukaryota 2759 Plants Plants 73.2 2.25e-13   NR PRW45431.1 3076 g2989 i0 62.7 12.7547169811321 51 19 96.2 0 153 1 34 84 PRW45431.1 proliferating cell nuclear antigen [Chlorella sorokiniana] diamond 2028 73.9 0.990527740189445 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
30570407 30570407 PRJEB50765_P_NODE_1173_length_288_cov_1.597610_g1149_i0 PRJEB50765 1173 288 1.59761 4.6011168 Chlorella sorokiniana 3076 Plants Plants 82 4.6e-17   NR PRW57226.1 3076 g1149 i0 51.3 11.0208333333333 78 38 81.3 0 2 235 52 129 PRW57226.1 60S ribosomal L18a-2 [Chlorella sorokiniana] diamond 3174 82 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
32877747 32877747 PRJEB50765_P_NODE_2780_length_166_cov_2.395349_g2756_i0 PRJEB50765 2780 166 2.395349 3.97627934 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 41.2 0.0446   NR KAL4517980.1 1650286 g2756 i0 48.7 0.704819277108434 39 20 70.5 0 7 123 121 159 KAL4517980.1 hypothetical protein Ndes2526A_g02346 [Chlorella desiccata (nom. nud.)] diamond 117 41.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;