RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB50765" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJEB50765 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
119553 119553 PRJEB50765_P_NODE_1521_length_245_cov_2.480769_g1497_i0 PRJEB50765 1521 245 2.480769 6.07788405 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 3.6e-20   NTclustered gi|470459156|ref|XM_004341277.1| 1257118 g1497 i0 92.308 8.14285714285714 78 6 32 0 18 95 1089 1166 Acanthamoeba castellanii str. Neff ribosomal protein L3, putative (ACA1_264110), partial mRNA blastn 1995 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8644450 8644450 PRJEB50765_P_NODE_2687_length_170_cov_1.428571_g2663_i0 PRJEB50765 2687 170 1.428571 2.4285707 Vermamoeba 1260114 Tubulinea other_Eukaryota 315 1.64e-81   NTclustered gi|2777861736|gb|PQ072230.1| 5778 g2663 i0 100 100.005882352941 170 0 100 0 1 170 1565 1396 Vermamoeba vermiformis strain CCAP_1534_12_consensus_sequence small subunit ribosomal RNA gene, partial sequence blastn 17001 315 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20520446 20520446 PRJEB50765_P_NODE_1837_length_215_cov_2.241573_g1813_i0 PRJEB50765 1837 215 2.241573 4.81938195 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 95.1 1.68e-21   NR XP_003293908.1 5786 g1813 i0 79.6 7.07441860465116 49 10 68.4 0 213 67 52 100 XP_003293908.1 uncharacterized protein DICPUDRAFT_93127 [Dictyostelium purpureum] diamond 1521 95.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
23071561 23071561 PRJEB50765_P_NODE_1979_length_205_cov_2.494048_g1955_i0 PRJEB50765 1979 205 2.494048 5.1127984 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 322 1.24e-83   NTclustered gi|423291980|gb|JQ519435.1| 5778 g1955 i0 95.098 92.4731707317073 204 10 99 0 1 204 511 714 Vermamoeba vermiformis clone JG10.93_f2 actin gene, partial cds blastn 18957 322 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28416595 28416595 PRJEB50765_P_NODE_1526_length_245_cov_1.855769_g1502_i0 PRJEB50765 1526 245 1.855769 4.54663405 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.9 2.44e-4   NR PRP88872.1 1890364 g1502 i0 38.8 3.02448979591837 85 48 99.2 1 244 2 166 250 PRP88872.1 hypothetical protein PROFUN_00340 [Planoprotostelium fungivorum] diamond 741 48.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29401963 29401963 PRJEB50765_P_NODE_2809_length_165_cov_1.820312_g2785_i0 PRJEB50765 2809 165 1.820312 3.0035148 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 60.1 5.88e-10   NR KAH3731392.1 1580589 g2785 i0 72.7 1.2 33 9 60 0 2 100 71 103 KAH3731392.1 cathepsin L 1 precursor [Pelomyxa schiedti] diamond 198 60.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29805605 29805605 PRJEB50765_P_NODE_2451_length_180_cov_1.594406_g2427_i0 PRJEB50765 2451 180 1.594406 2.8699308 Acytosteliaceae 2058183 Evosea other_Eukaryota 65.5 1.55e-10   NR XP_020437443.1 670386 g2427 i0 66.7 3.2 48 16 80 0 1 144 400 447 XP_020437443.1 actin binding protein [Heterostelium album PN500] diamond 576 65.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;