RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB50332" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB50332 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28928338 28928338 PRJEB50332_P_NODE_9828_length_225_cov_1.920732_g9746_i0 PRJEB50332 9828 225 1.920732 4.321647 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 68.9 1.79e-11   NR ETO26409.1 46433 g9746 i0 44.8 0.893333333333333 67 36 89.3 1 22 222 299 364 ETO26409.1 ubiquitin protein ligase, partial [Reticulomyxa filosa] diamond 201 68.9 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29237499 29237499 PRJEB50332_P_NODE_13509_length_209_cov_1.743243_g13427_i0 PRJEB50332 13509 209 1.743243 3.64337787 root 1 Root_unresolved Root_unresolved 72 4.32e-13   NR ETO23326.1 46433 g13427 i0 42.6 1.92344497607656 68 39 97.6 0 209 6 170 237 ETO23326.1 hypothetical protein RFI_13856, partial [Reticulomyxa filosa] diamond 402 72 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;