RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJEB50332" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB50332 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32018271 32018271 PRJEB50332_P_NODE_14898_length_207_cov_0.890411_g14816_i0 PRJEB50332 14898 207 0.890411 1.84315077 Pseudomonadati 3379134 Bacteria Bacteria 59.3 3.25e-9   NR WP_303680833.1 1100 g14816 i0 90.6 1.85507246376812 32 3 46.4 0 107 202 1 32 WP_303680833.1 MarR family EPS-associated transcriptional regulator [Pelodictyon luteolum] diamond 384 59.3 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;