RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB50332" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB50332 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27286379 27286379 PRJEB50332_P_NODE_8983_length_230_cov_1.538462_g8901_i0 PRJEB50332 8983 230 1.538462 3.5384626 Chlamydia trachomatis 813 Bacteria Bacteria 150 3.06e-40   NR CRH62499.1 813 g8901 i0 100 0.991304347826087 76 0 99.1 0 3 230 72 147 CRH62499.1 PTS system nitrogen regulatory protein IIA [Chlamydia trachomatis] diamond 228 150 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
32088266 32088266 PRJEB50332_P_NODE_16538_length_204_cov_0.909091_g16456_i0 PRJEB50332 16538 204 0.909091 1.85454564 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 126 2.62e-36   NR MFN4174350.1 2052176 g16456 i0 98.5 0.985294117647059 67 1 98.5 0 202 2 6 72 MFN4174350.1 adenylyltransferase/cytidyltransferase family protein [Parachlamydiaceae bacterium] diamond 201 126 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;