RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB50332" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB50332 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27318158 27318158 PRJEB50332_P_NODE_9003_length_230_cov_1.497041_g8921_i0 PRJEB50332 9003 230 1.497041 3.4431943 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 52.4 1.01e-5   NR MCA9324640.1 2026720 g8921 i0 41.9 0.965217391304348 74 36 95.2 4 3 221 57 124 MCA9324640.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 222 52.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27437903 27437903 PRJEB50332_P_NODE_17823_length_202_cov_0.921986_g17741_i0 PRJEB50332 17823 202 0.921986 1.86241172 Bacteria 2 Bacteria Bacteria 126 2.12e-33   NR OJU87599.1 1895829 g17741 i0 95.5 3.98019801980198 67 3 99.5 0 202 2 120 186 OJU87599.1 MAG: type I glyceraldehyde-3-phosphate dehydrogenase [Candidatus Saccharibacteria bacterium 49-20] diamond 804 127 0.992125984251969 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 49-20
29244151 29244151 PRJEB50332_P_NODE_8609_length_232_cov_1.982456_g8527_i0 PRJEB50332 8609 232 1.982456 4.59929792 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 144 5.19e-38   NR RKW02477.1 1917697 g8527 i0 98.7 0.982758620689655 76 1 98.3 0 3 230 254 329 RKW02477.1 MAG: ATP-dependent DNA helicase RecG [Candidatus Saccharimonas sp.] diamond 228 144 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;