RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB50332", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJEB50332 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3945443 3945443 PRJEB50332_P_NODE_10704_length_220_cov_1.786164_g10622_i0 PRJEB50332 10704 220 1.786164 3.9295608 Pseudomonadati 3379134 Bacteria Bacteria 87.8 3.85e-18   NR WP_294870111.1 1802247 g10622 i0 57.5 5.93181818181818 73 31 99.5 0 2 220 1020 1092 WP_294870111.1 calcium-binding protein [Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24] diamond 1305 88.2 0.99546485260771 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24
12872939 12872939 PRJEB50332_P_NODE_16971_length_203_cov_1.830986_g16889_i0 PRJEB50332 16971 203 1.830986 3.71690158 Arcobacter suis 1278212 Bacteria Bacteria 313 7.3499999999999995e-81   NTclustered gi|1474790806|gb|CP032100.1| 663365 g16889 i0 94.975 1.91625615763547 199 10 98 0 1 199 260994 261192 Arcobacter suis CECT 7833 chromosome, complete genome blastn 389 313 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter suis
21393380 21393380 PRJEB50332_P_NODE_3437_length_314_cov_1.407115_g3355_i0 PRJEB50332 3437 314 1.407115 4.4183411 Aliarcobacter 2321111 Bacteria Bacteria 54.7 0.008   NTclustered gi|1898121789|gb|CP060692.1| 28198 g3355 i0 100 0.646496815286624 29 0 9 0 56 84 1823553 1823581 Aliarcobacter cryaerophilus strain 16CS0830-1 chromosome, complete genome blastn 203 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;