RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJEB50332" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJEB50332 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17970956 17970956 PRJEB50332_P_NODE_12695_length_211_cov_0.866667_g12613_i0 PRJEB50332 12695 211 0.866667 1.82866737 Didymium iridis 5793 Evosea other_Eukaryota 385 1.61e-102   NTclustered gi|2687|emb|X60210.1| 5793 g12613 i0 99.526 1 211 1 100 0 1 211 5532 5322 D.iridis LSU rRNA gene blastn 211 385 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
18842891 18842891 PRJEB50332_P_NODE_735_length_631_cov_1.971930_g658_i0 PRJEB50332 735 631 1.97193 12.4428783 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 191 4.33e-59   NR XP_004339588.1 1257118 g658 i0 87.9 1.01743264659271 107 13 50.9 0 616 296 5 111 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 642 191 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19245037 19245037 PRJEB50332_P_NODE_2216_length_378_cov_1.542587_g2135_i0 PRJEB50332 2216 378 1.542587 5.83097886 Heterostelium album 2086695 Evosea other_Eukaryota 62.1 5.98e-5   NTclustered gi|1160555948|ref|XM_020573799.1| 670386 g2135 i0 85.965 0.150793650793651 57 8 15 0 14 70 93 149 Polysphondylium pallidum PN500 40S ribosomal protein S30 (rps30-2), partial mRNA blastn 57 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
26748198 26748198 PRJEB50332_P_NODE_10781_length_220_cov_1.528302_g10699_i0 PRJEB50332 10781 220 1.528302 3.3622644 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 88.6 1.4e-18   NR XP_012747785.1 1410327 g10699 i0 61.1 1.96363636363636 72 28 98.2 0 216 1 301 372 XP_012747785.1 hypothetical protein SAMD00019534_124630 [Acytostelium subglobosum LB1] diamond 432 88.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
27602423 27602423 PRJEB50332_P_NODE_5884_length_256_cov_1.333333_g5802_i0 PRJEB50332 5884 256 1.333333 3.41333248 Dictyostelium discoideum 44689 Evosea other_Eukaryota 62.4 5.25e-9   NR AAA75489.1 44689 g5802 i0 40.6 0.80859375 69 41 80.9 0 243 37 11 79 AAA75489.1 fimbrin [Dictyostelium discoideum] diamond 207 62.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27722243 27722243 PRJEB50332_P_NODE_17804_length_202_cov_0.921986_g17722_i0 PRJEB50332 17804 202 0.921986 1.86241172 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82 3.03e-16   NR XP_647027.1 352472 g17722 i0 57.5 7.76732673267327 73 24 98 1 3 200 408 480 XP_647027.1 hypothetical protein DDB_G0268868 [Dictyostelium discoideum AX4] diamond 1569 82.8 0.990338164251208 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27785192 27785192 PRJEB50332_P_NODE_9064_length_230_cov_1.153846_g8982_i0 PRJEB50332 9064 230 1.153846 2.6538458 root 1 Root_unresolved Root_unresolved 115 1.67e-28   NR XP_003288790.1 5786 g8982 i0 73.7 8.92173913043478 76 20 99.1 0 2 229 80 155 XP_003288790.1 mitochondrial isovaleryl-CoA dehydrogenase [Dictyostelium purpureum] diamond 2052 115 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
28454938 28454938 PRJEB50332_P_NODE_2046_length_393_cov_1.373494_g1965_i0 PRJEB50332 2046 393 1.373494 5.39783142 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 61.6 4.28e-8   NR KAH3758824.1 1580589 g1965 i0 35.3 0.648854961832061 85 55 64.9 0 392 138 297 381 KAH3758824.1 hypothetical protein Pelo_9343 [Pelomyxa schiedti] diamond 255 61.6 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29149778 29149778 PRJEB50332_P_NODE_10769_length_220_cov_1.622642_g10687_i0 PRJEB50332 10769 220 1.622642 3.5698124 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 57.4 1.91e-7   NR KYQ88348.1 361077 g10687 i0 36.1 1.59545454545455 72 46 98.2 0 5 220 103 174 KYQ88348.1 peptidase S8 and S53 domain-containing protein [Tieghemostelium lacteum] diamond 351 57.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
30381496 30381496 PRJEB50332_P_NODE_573_length_719_cov_3.273556_g503_i0 PRJEB50332 573 719 3.273556 23.53686764 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 59.3 4.16e-6   NR KAH3758402.1 1580589 g503 i0 37.3 0.312934631432545 75 43 30.9 2 289 68 312 383 KAH3758402.1 hypothetical protein Pelo_9791 [Pelomyxa schiedti] diamond 225 59.3 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32088268 32088268 PRJEB50332_P_NODE_5758_length_258_cov_1.918782_g5676_i0 PRJEB50332 5758 258 1.918782 4.95045756 Heterostelium album PN5 2086695 Evosea other_Eukaryota 101 1.16e-22   NR XP_020434874.1 670386 g5676 i0 54.8 1.95348837209302 84 38 97.7 0 252 1 554 637 XP_020434874.1 glycyl-tRNA synthetase [Heterostelium album PN500] diamond 504 101 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
32688718 32688718 PRJEB50332_P_NODE_9440_length_227_cov_2.078313_g9358_i0 PRJEB50332 9440 227 2.078313 4.71777051 Entamoeba nuttalli 412467 Evosea other_Eukaryota 43.9 0.012   NR GAB1218791.1 412467 g9358 i0 44.7 1.86343612334802 47 26 62.1 0 220 80 749 795 GAB1218791.1 hypothetical protein ENUP19_0004G0019 [Entamoeba nuttalli] diamond 423 43.9 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba nuttalli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;