RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB49404", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Kitrinoviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB49404 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11584762 11584762 PRJEB49404_P_NODE_413290_length_209_cov_1.205882_g399489_i0 PRJEB49404 413290 209 1.205882 2.52029338 Ilarvirus PDV 3429929 Viruses Viruses 370 4.45e-98   NTclustered gi|1027931608|gb|KU215408.1| 33760 g399489 i0 98.571 29.1483253588517 210 1 99 1 1 208 1218 1427 Prune dwarf virus isolate Lambert 43 segment RNA1, partial sequence blastn 6092 370 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Ilarvirus PDV
14146049 14146049 PRJEB49404_P_NODE_647472_length_151_cov_1.080357_g633671_i0 PRJEB49404 647472 151 1.080357 1.63133907 Ilarvirus PDV 3429929 Viruses Viruses 257 2.43e-64   NTclustered gi|1700879364|gb|MK834274.1| 33760 g633671 i0 97.351 38.4503311258278 151 4 100 0 1 151 2472 2622 Prune dwarf virus isolate GBCV_PDV001 segment RNA1 replicase gene, complete cds blastn 5806 257 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Ilarvirus PDV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;