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contig_metadata

18 rows where bioproject = "PRJEB49404" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB49404 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1369372 1369372 PRJEB49404_P_NODE_16782_length_1911_cov_3.402778_g11324_i0 PRJEB49404 16782 1911 3.402778 65.02708758 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 2152 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g11324 i0 87.221 107.526425954997 1925 202 99 39 2 1911 3044204 3042309 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 205483 2152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5219640 5219640 PRJEB49404_P_NODE_636145_length_153_cov_1.052632_g622344_i0 PRJEB49404 636145 153 1.052632 1.61052696 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 250 4.14e-62   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g622344 i0 96.078 88.0196078431373 153 6 100 0 1 153 2075209 2075057 Gemmatimonas phototrophica strain AP64, complete genome blastn 13467 250 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
6495680 6495680 PRJEB49404_P_NODE_642386_length_151_cov_2.642857_g628585_i0 PRJEB49404 642386 151 2.642857 3.99071407 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 209 6.91e-50   NTclustered gi|2874253978|emb|OY970303.1| 412054 g628585 i0 92.617 179.794701986755 149 6 97 4 3 149 1902961 1902816 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 27149 209 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10321876 10321876 PRJEB49404_P_NODE_90009_length_620_cov_2.617900_g76776_i0 PRJEB49404 90009 620 2.6179 16.23098 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 785 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g76776 i0 89.666 104.608064516129 629 48 100 11 1 620 1903620 1903000 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 64857 785 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14134170 14134170 PRJEB49404_P_NODE_399872_length_214_cov_1.457143_g386071_i0 PRJEB49404 399872 214 1.457143 3.11828602 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 287 4.75e-73   NTclustered gi|2874253978|emb|OY970303.1| 412054 g386071 i0 91.748 436.429906542056 206 17 96 0 9 214 1903906 1904111 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 93396 287 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18842738 18842738 PRJEB49404_P_NODE_576515_length_164_cov_1.312000_g562714_i0 PRJEB49404 576515 164 1.312 2.15168 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 93.6 1.57e-20   NR HET6763538.1 3047548 g562714 i0 81.5 8.85365853658537 54 10 98.8 0 2 163 702 755 HET6763538.1 heavy metal translocating P-type ATPase [Longimicrobiaceae bacterium] diamond 1452 93.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
23061465 23061465 PRJEB49404_P_NODE_475919_length_188_cov_2.201342_g462118_i0 PRJEB49404 475919 188 2.201342 4.13852296 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 276 8.780000000000001e-70   NTclustered gi|2874253728|emb|OY969570.1| 412054 g462118 i0 93.085 222.239361702128 188 13 100 0 1 188 172334 172521 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 41781 276 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
24343501 24343501 PRJEB49404_P_NODE_645660_length_151_cov_1.455357_g631859_i0 PRJEB49404 645660 151 1.455357 2.19758907 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 159 7.059999999999998e-35   NTclustered gi|2874253789|emb|OY969773.1| 412054 g631859 i0 85.906 53.3576158940397 149 21 99 0 3 151 422858 423006 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 8057 159 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26653380 26653380 PRJEB49404_P_NODE_515441_length_178_cov_1.179856_g501640_i0 PRJEB49404 515441 178 1.179856 2.10014368 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 104 1.19e-25   NR MBC7843561.1 2026741 g501640 i0 76.3 0.99438202247191 59 14 99.4 0 2 178 22 80 MBC7843561.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 177 104 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26837089 26837089 PRJEB49404_P_NODE_493501_length_183_cov_2.888889_g479700_i0 PRJEB49404 493501 183 2.888889 5.28666687 Pseudomonadati 3379134 Bacteria Bacteria 42 0.0255   NR MEE2899207.1 2026742 g479700 i0 41.4 1.9344262295082 58 31 93.4 2 9 179 13 68 MEE2899207.1 hypothetical protein [Gemmatimonadota bacterium] diamond 354 42 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27437900 27437900 PRJEB49404_P_NODE_347203_length_237_cov_2.212121_g333402_i0 PRJEB49404 347203 237 2.212121 5.24272677 Pseudomonadati 3379134 Bacteria Bacteria 139 4.18e-37   NR HEX6748314.1 2029185 g333402 i0 76.9 3.9493670886076 78 18 98.7 0 2 235 369 446 HEX6748314.1 epoxide hydrolase [Longimicrobium sp.] diamond 936 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
27911013 27911013 PRJEB49404_P_NODE_271525_length_283_cov_2.196721_g257724_i0 PRJEB49404 271525 283 2.196721 6.21672043 Bacteria 2 Bacteria Bacteria 47.4 0.00129   NR MBA3406070.1 2026741 g257724 i0 46.3 0.795053003533569 41 22 43.5 0 131 9 1 41 MBA3406070.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 225 47.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28044247 28044247 PRJEB49404_P_NODE_502625_length_181_cov_1.591549_g488824_i0 PRJEB49404 502625 181 1.591549 2.88070369 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 60.5 9.08e-9   NR MCC6430334.1 2026741 g488824 i0 56.7 1.95580110497238 60 26 99.4 0 2 181 56 115 MCC6430334.1 IS66 family transposase [Gemmatimonadaceae bacterium] diamond 354 60.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29149770 29149770 PRJEB49404_P_NODE_616849_length_156_cov_1.589744_g603048_i0 PRJEB49404 616849 156 1.589744 2.48000064 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 92 1.14e-22   NR HZD84984.1 2026741 g603048 i0 90.2 0.980769230769231 51 5 98.1 0 2 154 43 93 HZD84984.1 SDR family oxidoreductase [Gemmatimonadaceae bacterium] diamond 153 92 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31423941 31423941 PRJEB49404_P_NODE_613076_length_157_cov_1.322034_g599275_i0 PRJEB49404 613076 157 1.322034 2.07559338 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 53.1 2.47e-6   NR HXI32920.1 2448054 g599275 i0 50 1.98726114649682 52 26 99.4 0 157 2 444 495 HXI32920.1 hypothetical protein [Gemmatimonadales bacterium] diamond 312 53.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31740100 31740100 PRJEB49404_P_NODE_585057_length_162_cov_1.764228_g571256_i0 PRJEB49404 585057 162 1.764228 2.85804936 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 52.8 3.25e-6   NR HXW96391.1 2448054 g571256 i0 52.1 0.888888888888889 48 23 88.9 0 17 160 57 104 HXW96391.1 class I SAM-dependent methyltransferase [Gemmatimonadales bacterium] diamond 144 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31834964 31834964 PRJEB49404_P_NODE_381337_length_221_cov_2.653846_g367536_i0 PRJEB49404 381337 221 2.653846 5.86499966 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 79.3 2.69e-15   NR HEX6535207.1 2026741 g367536 i0 66.1 0.841628959276018 62 20 84.2 1 189 4 168 228 HEX6535207.1 OmpA family protein [Gemmatimonadaceae bacterium] diamond 186 79.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31891672 31891672 PRJEB49404_P_NODE_473297_length_189_cov_1.760000_g459496_i0 PRJEB49404 473297 189 1.76 3.3264 Bacteria 2 Bacteria Bacteria 84.3 4.13e-17   NR WP_331876069.1 2029185 g459496 i0 65.1 9 63 22 100 0 189 1 532 594 WP_331876069.1 toxin TcdB middle/N-terminal domain-containing protein, partial [Longimicrobium sp.] diamond 1701 85.1 0.990599294947121 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;