RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB49404" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJEB49404 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11194437 11194437 PRJEB49404_P_NODE_525649_length_175_cov_1.852941_g511848_i0 PRJEB49404 525649 175 1.852941 3.24264675 Cetobacterium 180162 Bacteria Bacteria 318 1.32e-82   NTclustered gi|2865368125|gb|CP122294.1| 188913 g511848 i0 99.429 521.742857142857 175 1 100 0 1 175 279336 279162 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 91305 318 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
11194469 11194469 PRJEB49404_P_NODE_569649_length_165_cov_2.277778_g555848_i0 PRJEB49404 569649 165 2.277778 3.7583337 Fusobacterium 848 Bacteria Bacteria 305 9.59e-79   NTclustered gi|2704983719|gb|CP077132.1| 851 g555848 i0 100 456.927272727273 165 0 100 0 1 165 91649 91813 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 75393 305 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17568718 17568718 PRJEB49404_P_NODE_187174_length_369_cov_1.642424_g173375_i0 PRJEB49404 187174 369 1.642424 6.06054456 Fusobacterium 848 Bacteria Bacteria 660 0   NTclustered gi|2704979632|gb|CP077143.1| 851 g173375 i0 98.916 486.084010840108 369 4 100 0 1 369 74734 75102 Fusobacterium nucleatum strain KCOM2878 chromosome, complete genome blastn 179365 660 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17568844 17568844 PRJEB49404_P_NODE_396594_length_215_cov_1.914773_g382793_i0 PRJEB49404 396594 215 1.914773 4.11676195 Fusobacterium 848 Bacteria Bacteria 387 4.57e-103   NTclustered gi|2704983719|gb|CP077132.1| 851 g382793 i0 99.07 491.488372093023 215 2 100 0 1 215 92640 92854 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 105670 387 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
17967688 17967688 PRJEB49404_P_NODE_613035_length_157_cov_1.347458_g599234_i0 PRJEB49404 613035 157 1.347458 2.11550906 Cetobacterium somerae 188913 Bacteria Bacteria 267 4.25e-67   NTclustered gi|2865366169|gb|CP122292.1| 188913 g599234 i0 97.452 57.0063694267516 157 3 100 1 1 157 420306 420151 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 8950 267 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
22667837 22667837 PRJEB49404_P_NODE_287218_length_272_cov_2.051502_g273417_i0 PRJEB49404 287218 272 2.051502 5.58008544 Fusobacterium 848 Bacteria Bacteria 473 4.4899999999999996e-129   NTclustered gi|2704968189|gb|CP077126.1| 851 g273417 i0 98.155 491.198529411765 271 5 99 0 2 272 1546147 1545877 Fusobacterium nucleatum strain KCOM3685 chromosome, complete genome blastn 133606 473 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
23044895 23044895 PRJEB49404_P_NODE_120259_length_505_cov_1.965665_g106553_i0 PRJEB49404 120259 505 1.965665 9.92660825 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 909 0   NTclustered gi|922689899|gb|CP012410.1| 712357 g106553 i0 99.206 436.988118811881 504 4 99 0 2 505 53149 52646 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 220679 909 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
24339013 24339013 PRJEB49404_P_NODE_550560_length_169_cov_2.661538_g536759_i0 PRJEB49404 550560 169 2.661538 4.49799922 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 313 5.859999999999999e-81   NTclustered gi|922689899|gb|CP012410.1| 712357 g536759 i0 100 503.87573964497 169 0 100 0 1 169 52333 52501 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 85155 313 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;