RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJEB49404" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJEB49404 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
991158 991158 PRJEB49404_P_NODE_622181_length_155_cov_1.706897_g608380_i0 PRJEB49404 622181 155 1.706897 2.64569035 Trebouxia 13786 Plants Plants 287 3.21e-73   NTclustered gi|49781197|gb|AY648107.1| 283661 g608380 i0 100 100.038709677419 155 0 100 0 1 155 1797 1643 Trebouxia sp. Wei 22-c 26S ribosomal RNA gene, partial sequence blastn 15506 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Wei 22-c
1374779 1374779 PRJEB49404_P_NODE_285302_length_273_cov_3.098291_g271501_i0 PRJEB49404 285302 273 3.098291 8.45833443 Scherffelia dubia 3190 Plants Plants 326 1.34e-84   NTclustered gi|371782096|emb|HE610128.1| 3190 g271501 i0 88.278 100.59706959707 273 31 100 1 1 273 2814 2543 Scherffelia dubia 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 17.86 blastn 27463 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
3541430 3541430 PRJEB49404_P_NODE_272223_length_283_cov_1.348361_g258422_i0 PRJEB49404 272223 283 1.348361 3.81586163 Trebouxia 13786 Plants Plants 459 1.3199999999999998e-124   NTclustered gi|21933|emb|Z21551.1| 13788 g258422 i0 95.775 100.257950530035 284 10 100 2 1 283 897 615 T.impressa gene encoding 18S ribosomal RNA blastn 28373 462 0.993506493506494 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia impressa
10319802 10319802 PRJEB49404_P_NODE_629309_length_154_cov_1.304348_g615508_i0 PRJEB49404 629309 154 1.304348 2.00869592 Monoraphidium neglectum 145388 Plants Plants 52.8 0.013   NTclustered gi|926782681|ref|XM_014044361.1| 145388 g615508 i0 100 0.181818181818182 28 0 18 0 16 43 170 143 Monoraphidium neglectum COBW domain-containing protein 1 mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
15018772 15018772 PRJEB49404_P_NODE_289572_length_270_cov_8.787879_g275771_i0 PRJEB49404 289572 270 8.787879 23.7272733 Coccomyxa 41891 Plants Plants 401 2.1299999999999992e-107   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g275771 i0 93.68 99.7703703703704 269 15 99 1 2 270 4149 3883 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26938 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;