RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJEB49404", tax_clade = "Sar" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB49404 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
99984 99984 PRJEB49404_P_NODE_277081_length_279_cov_2.150000_g263280_i0 PRJEB49404 277081 279 2.15 5.9985 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 420 6.11e-113   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g263280 i0 93.885 28.0143369175627 278 17 99 0 1 278 352 629 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 7816 420 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
4819025 4819025 PRJEB49404_P_NODE_526324_length_175_cov_1.632353_g512523_i0 PRJEB49404 526324 175 1.632353 2.85661775 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 313 6.13e-81   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g512523 i0 98.857 14.1885714285714 175 2 100 0 1 175 1500 1674 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 2483 313 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
6477323 6477323 PRJEB49404_P_NODE_258926_length_293_cov_1.885827_g245125_i0 PRJEB49404 258926 293 1.885827 5.52547311 Vorticella sp. 1 2979179 SAR_Eukaryotes SAR_Eukaryotes 481 2.92e-131   NTclustered gi|2304601489|gb|OP458310.1| 2979179 g245125 i0 96.259 92.4505119453925 294 10 100 1 1 293 1805 1512 Vorticella sp. 1 large subunit ribosomal RNA gene, partial sequence blastn 27088 481 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 1
11584858 11584858 PRJEB49404_P_NODE_415330_length_208_cov_1.633136_g401529_i0 PRJEB49404 415330 208 1.633136 3.39692288 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 279 7.68e-71   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g401529 i0 90.909 6.36538461538461 209 17 100 2 1 208 107 314 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1324 279 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
16293612 16293612 PRJEB49404_P_NODE_234533_length_314_cov_2.709091_g220732_i0 PRJEB49404 234533 314 2.709091 8.50654574 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 235 2.72e-57   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g220732 i0 97.794 2.15923566878981 136 3 43 0 179 314 3082 2947 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 678 235 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
21789898 21789898 PRJEB49404_P_NODE_551878_length_169_cov_1.776923_g538077_i0 PRJEB49404 551878 169 1.776923 3.00299987 Cyclidium glaucoma 35100 SAR_Eukaryotes SAR_Eukaryotes 278 2.14e-70   NTclustered gi|90657152|gb|DQ442810.1| 35100 g538077 i0 96.45 40.9230769230769 169 4 99 2 1 168 417 584 Cyclidium glaucoma isolate ES34 28S ribosomal RNA gene, partial sequence blastn 6916 278 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Cyclidiidae Cyclidium Cyclidium glaucoma

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;