RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB48872", tax_kingdom = "Pseudomonadati" and tax_phylum = "Abditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Abditibacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB48872 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2630854 2630854 PRJEB48872_P_NODE_492623_length_196_cov_1.394904_g476811_i0 PRJEB48872 492623 196 1.394904 2.73401184 Abditibacteriota bacterium 2783868 Bacteria Bacteria 244 2.61e-60   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g476811 i0 90.104 589 192 13 98 2 3 194 2853529 2853344 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 115444 244 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium
19201895 19201895 PRJEB48872_P_NODE_397436_length_231_cov_3.562500_g381624_i0 PRJEB48872 397436 231 3.5625 8.229375 Abditibacteriota bacterium 2783868 Bacteria Bacteria 233 6.87e-57   NTclustered gi|2215576334|dbj|AP024152.1| 2783868 g381624 i0 84.979 6.06926406926407 233 31 100 4 1 231 2850712 2850942 Abditibacteriota bacterium IAD-21 DNA, complete genome blastn 1402 233 1 Bacteria   Pseudomonadati Abditibacteriota         Abditibacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;