RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB48872", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB48872 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27159644 27159644 PRJEB48872_P_NODE_404942_length_228_cov_1.952381_g389130_i0 PRJEB48872 404942 228 1.952381 4.45142868 Trichinella nativa 6335 Nematoda Nematoda 96.3 1.4599999999999999e-24   NR KRZ46778.1 6335 g389130 i0 100 0.539473684210526 41 0 53.9 0 3 125 1 41 KRZ46778.1 hypothetical protein T02_4801, partial [Trichinella nativa] diamond 123 96.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
31012942 31012942 PRJEB48872_P_NODE_341715_length_260_cov_2.199095_g325903_i0 PRJEB48872 341715 260 2.199095 5.717647 Trichinella sp. T9 181606 Nematoda Nematoda 50.1 4.18e-6   NR KRX35621.1 181606 g325903 i0 100 0.3 26 0 30 0 79 2 1 26 KRX35621.1 hypothetical protein T09_1644 [Trichinella sp. T9] diamond 78 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T9
32468215 32468215 PRJEB48872_P_NODE_72839_length_812_cov_27.443726_g58987_i0 PRJEB48872 72839 812 27.443726 222.84305512 Trichinella nativa 6335 Nematoda Nematoda 53.9 4.78e-6   NR KRZ47273.1 6335 g58987 i0 81.8 0.12192118226601 33 6 12.2 0 417 319 11 43 KRZ47273.1 hypothetical protein T02_1459 [Trichinella nativa] diamond 99 53.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;