RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB48872" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJEB48872 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8643951 8643951 PRJEB48872_P_NODE_680827_length_153_cov_1.131579_g665015_i0 PRJEB48872 680827 153 1.131579 1.73131587 Fusobacterium 848 Bacteria Bacteria 278 1.9e-70   NTclustered gi|2706069597|gb|CP077108.1| 76857 g665015 i0 99.346 87.9542483660131 153 1 100 0 1 153 1185157 1185005 Fusobacterium polymorphum strain KCOM1281 chromosome, complete genome blastn 13457 278 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
9918950 9918950 PRJEB48872_P_NODE_534308_length_184_cov_1.531034_g518496_i0 PRJEB48872 534308 184 1.531034 2.81710256 Fusobacterium 848 Bacteria Bacteria 329 6.47e-86   NTclustered gi|2706433495|gb|CP077153.1| 76857 g518496 i0 98.913 476.646739130435 184 2 100 0 1 184 2421269 2421452 Fusobacterium polymorphum strain KCOM1274 chromosome, complete genome blastn 87703 329 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
16661986 16661986 PRJEB48872_P_NODE_579114_length_173_cov_1.447761_g563302_i0 PRJEB48872 579114 173 1.447761 2.50462653 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 320 3.61e-83   NTclustered gi|1276705688|gb|CP024698.1| 2663009 g563302 i0 100 468.606936416185 173 0 100 0 1 173 508737 508909 Fusobacterium pseudoperiodonticum strain KCOM 1283 chromosome, complete genome blastn 81069 320 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
21392655 21392655 PRJEB48872_P_NODE_242257_length_337_cov_2.348993_g226445_i0 PRJEB48872 242257 337 2.348993 7.91610641 Fusobacterium 848 Bacteria Bacteria 623 5.369999999999999e-174   NTclustered gi|2445153921|gb|CP117797.1| 851 g226445 i0 100 495.961424332344 337 0 100 0 1 337 470097 469761 Fusobacterium nucleatum strain FNA chromosome, complete genome blastn 167139 623 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;