RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJEB48872", tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 1 ✖

bioproject 1

  • PRJEB48872 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4818601 4818601 PRJEB48872_P_NODE_412384_length_225_cov_1.725806_g396572_i0 PRJEB48872 412384 225 1.725806 3.8830635 Candidatus Williamhamiltonella 568987 Bacteria Bacteria 383 6.25e-102   NTclustered gi|34485462|gb|AY296733.1| 138072 g396572 i0 97.748 603.506666666667 222 5 99 0 4 225 3103 3324 Candidatus Hamiltonella defensa 16S ribosomal RNA gene, partial sequence; tRNA-Glu gene, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 135789 383 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Williamhamiltonella Candidatus Williamhamiltonella defendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;