RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB48872", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJEB48872 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8643718 8643718 PRJEB48872_P_NODE_240107_length_339_cov_3.310000_g224295_i0 PRJEB48872 240107 339 3.31 11.2209 Stenostomum 39238 Platyhelminthes Platyhelminthes 558 1.55e-154   NTclustered gi|209968707|gb|FJ384870.1| 52061 g224295 i0 96.716 48.952802359882 335 11 99 0 1 335 380 714 Stenostomum leucops isolate K05_55 28S ribosomal RNA gene, partial sequence blastn 16595 558 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
17937781 17937781 PRJEB48872_P_NODE_599375_length_168_cov_2.480620_g583563_i0 PRJEB48872 599375 168 2.48062 4.1674416 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 311 2.11e-80   NTclustered gi|28273263|gb|AY157151.1| 52061 g583563 i0 100 41.4345238095238 168 0 100 0 1 168 1934 2101 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 6961 311 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
21392756 21392756 PRJEB48872_P_NODE_439697_length_214_cov_1.497143_g423885_i0 PRJEB48872 439697 214 1.497143 3.20388602 Stenostomum 39238 Platyhelminthes Platyhelminthes 385 1.64e-102   NTclustered gi|209968707|gb|FJ384870.1| 52061 g423885 i0 99.065 61.088785046729 214 2 100 0 1 214 32 245 Stenostomum leucops isolate K05_55 28S ribosomal RNA gene, partial sequence blastn 13073 385 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
23943085 23943085 PRJEB48872_P_NODE_601439_length_168_cov_1.496124_g585627_i0 PRJEB48872 601439 168 1.496124 2.51348832 Metazoa 33208 Platyhelminthes Platyhelminthes 300 4.56e-77   NTclustered gi|60600609|gb|AY810873.1| 6182 g585627 i0 98.81 45.5238095238095 168 2 100 0 1 168 162 329 Schistosoma japonicum clone SJCHGC07419 unknown mRNA blastn 7648 300 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;