RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJEB48872", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 8 ✖

bioproject 1

  • PRJEB48872 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1359961 1359961 PRJEB48872_P_NODE_587062_length_171_cov_1.659091_g571250_i0 PRJEB48872 587062 171 1.659091 2.83704561 Biomphalaria glabrata 6526 Mollusca Mollusca 60.2 8.56e-5   NTclustered gi|2502134919|ref|XM_056013775.1| 6526 g571250 i0 100 1.07602339181287 32 0 19 0 59 90 264 233 PREDICTED: Biomphalaria glabrata guanine nucleotide-binding protein-like 3 homolog (LOC106077405), transcript variant X5, mRNA blastn 184 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
5187915 5187915 PRJEB48872_P_NODE_586365_length_171_cov_1.893939_g570553_i0 PRJEB48872 586365 171 1.893939 3.23863569 Magallana angulata 2784310 Mollusca Mollusca 316 4.6e-82   NTclustered gi|2416874841|ref|XR_008241671.1| 2784310 g570553 i0 100 89.8830409356725 171 0 100 0 1 171 3782 3612 PREDICTED: Crassostrea angulata large subunit ribosomal RNA (LOC128170120), rRNA blastn 15370 316 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana angulata
6467493 6467493 PRJEB48872_P_NODE_665286_length_155_cov_3.517241_g649474_i0 PRJEB48872 665286 155 3.517241 5.45172355 Bradybaena similaris 145626 Mollusca Mollusca 60.2 7.62e-5   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g649474 i0 100 0.387096774193548 32 0 21 0 3 34 59053712 59053743 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 60 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
12469716 12469716 PRJEB48872_P_NODE_411870_length_225_cov_2.032258_g396058_i0 PRJEB48872 411870 225 2.032258 4.5725805 Ostreidae 6563 Mollusca Mollusca 412 7.97e-111   NTclustered gi|1843197836|ref|XR_004597991.1| 29159 g396058 i0 100 99.1066666666667 223 0 99 0 1 223 147 369 PREDICTED: Magallana gigas small subunit ribosomal RNA (LOC117684133), rRNA blastn 22299 412 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
23024315 23024315 PRJEB48872_P_NODE_312179_length_279_cov_1.379167_g296367_i0 PRJEB48872 312179 279 1.379167 3.84787593 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.007   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g296367 i0 96.875 0.229390681003584 32 1 11 0 160 191 8068705 8068736 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
30626974 30626974 PRJEB48872_P_NODE_563653_length_177_cov_0.869565_g547841_i0 PRJEB48872 563653 177 0.869565 1.53913005 Metazoa 33208 Mollusca Mollusca 49.7 5.64e-5   NR WAR17153.1 6604 g547841 i0 46.3 1.35593220338983 41 22 69.5 0 1 123 544 584 WAR17153.1 LOW QUALITY PROTEIN: ZN845-like protein [Mya arenaria] diamond 240 49.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
31107600 31107600 PRJEB48872_P_NODE_475875_length_201_cov_1.808642_g460063_i0 PRJEB48872 475875 201 1.808642 3.63537042 Dreissena polymorpha 45954 Mollusca Mollusca 57 1.9e-7   NR XP_052261905.1 45954 g460063 i0 43.1 0.761194029850746 51 29 76.1 0 172 20 194 244 XP_052261905.1 zinc finger protein 84-like, partial [Dreissena polymorpha] diamond 153 57 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
31487419 31487419 PRJEB48872_P_NODE_542776_length_182_cov_1.146853_g526964_i0 PRJEB48872 542776 182 1.146853 2.08727246 Dreissena polymorpha 45954 Mollusca Mollusca 40 0.04   NR KAH3799778.1 45954 g526964 i0 45.9 0.60989010989011 37 13 49.5 2 64 153 9 45 KAH3799778.1 hypothetical protein DPMN_153394 [Dreissena polymorpha] diamond 111 40 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;