contig_metadata
5 rows where bioproject = "PRJEB48872" and tax_clade = "Bacteria candidate phyla"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20469178 | 20469178 | PRJEB48872_P_NODE_223957_length_358_cov_1.275862_g208146_i0 | PRJEB48872 | 223957 | 358 | 1.275862 | 4.56758596 | Candidatus Methylomirabilis oxygeniifera | 671143 | Bacteria | Bacteria | 298 | 3.94e-76 | NTclustered | gi|507148395|ref|NR_103198.1| | 671143 | g208146 | i0 | 82.386 | 122.396648044693 | 352 | 53 | 97 | 8 | 13 | 358 | 1148 | 1496 | Candidatus Methylomirabilis oxyfera 23S ribosomal RNA gene, complete sequence | blastn | 43818 | 298 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Methylomirabilota | Candidatus Methylomirabilia | Candidatus Methylomirabilales | Candidatus Methylomirabilaceae | Candidatus Methylomirabilis | Candidatus Methylomirabilis oxygeniifera | ||
| 26716566 | 26716566 | PRJEB48872_P_NODE_573281_length_174_cov_2.000000_g557469_i0 | PRJEB48872 | 573281 | 174 | 2 | 3.48 | Candidatus Parcubacteria bacterium | 2762014 | Bacteria | Bacteria | 58.2 | 5.51e-8 | NR | RJQ27558.1 | 2762014 | g557469 | i0 | 49.1 | 0.948275862068966 | 55 | 28 | 94.8 | 0 | 171 | 7 | 6 | 60 | RJQ27558.1 MAG: DEAD/DEAH box helicase [Candidatus Parcubacteria bacterium] | diamond | 165 | 58.2 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Parcubacteria | Candidatus Parcubacteria bacterium | ||||||
| 28644312 | 28644312 | PRJEB48872_P_NODE_648127_length_159_cov_1.025000_g632315_i0 | PRJEB48872 | 648127 | 159 | 1.025 | 1.62975 | Minisyncoccota bacterium | 2053589 | Bacteria | Bacteria | 52.4 | 4.61e-6 | NR | HOL54201.1 | 2053589 | g632315 | i0 | 49 | 0.962264150943396 | 51 | 26 | 96.2 | 0 | 155 | 3 | 118 | 168 | HOL54201.1 hypothetical protein [Candidatus Paceibacterota bacterium] | diamond | 153 | 52.4 | 1 | Bacteria | Bacteria candidate phyla | Minisyncoccota | Minisyncoccota bacterium | ||||||
| 31202078 | 31202078 | PRJEB48872_P_NODE_546615_length_181_cov_1.154930_g530803_i0 | PRJEB48872 | 546615 | 181 | 1.15493 | 2.0904233 | Minisyncoccota bacterium | 2053589 | Bacteria | Bacteria | 107 | 5.38e-26 | NR | HVX91236.1 | 2053589 | g530803 | i0 | 86.4 | 0.977900552486188 | 59 | 8 | 97.8 | 0 | 179 | 3 | 105 | 163 | HVX91236.1 IS3 family transposase [Candidatus Paceibacterota bacterium] | diamond | 177 | 107 | 1 | Bacteria | Bacteria candidate phyla | Minisyncoccota | Minisyncoccota bacterium | ||||||
| 32563119 | 32563119 | PRJEB48872_P_NODE_578339_length_173_cov_1.641791_g562527_i0 | PRJEB48872 | 578339 | 173 | 1.641791 | 2.84029843 | Candidatus Binataceae bacterium | 2785449 | Bacteria | Bacteria | 78.2 | 4.65e-15 | NR | HZO80131.1 | 2785449 | g562527 | i0 | 75 | 2.93063583815029 | 56 | 14 | 97.1 | 0 | 6 | 173 | 786 | 841 | HZO80131.1 cation-transporting P-type ATPase [Candidatus Binataceae bacterium] | diamond | 507 | 78.2 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Binatota | Candidatus Binatia | Candidatus Binatales | Candidatus Binataceae | Candidatus Binataceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;