RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB48872" and tax_clade = "Amoebozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJEB48872 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3890705 3890705 PRJEB48872_P_NODE_141424_length_501_cov_18.601732_g125713_i0 PRJEB48872 141424 501 18.601732 93.19467732 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 784 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g125713 i0 94.882 12.6766467065868 508 15 100 8 1 501 5932 5429 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6351 784 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11194162 11194162 PRJEB48872_P_NODE_672409_length_154_cov_1.782609_g656597_i0 PRJEB48872 672409 154 1.782609 2.74521786 root 1 Root_unresolved Root_unresolved 285 1.14e-72   NTclustered gi|909719646|gb|KT185626.1| 5755 g656597 i0 100 30.6948051948052 154 0 100 0 1 154 3667 3820 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4727 285 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15368753 15368753 PRJEB48872_P_NODE_185133_length_411_cov_15.766129_g169330_i0 PRJEB48872 185133 411 15.766129 64.79879019 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 630 3.989999999999999e-176   NTclustered gi|300078498|gb|GU001160.1| 5755 g169330 i0 94.776 35.7469586374696 402 17 97 1 14 411 7831 7430 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14692 630 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16293515 16293515 PRJEB48872_P_NODE_661253_length_156_cov_1.752137_g645441_i0 PRJEB48872 661253 156 1.752137 2.73333372 Acanthamoeba 5754 Discosea other_Eukaryota 289 9e-74   NTclustered gi|1146076837|gb|KY072782.1| 5755 g645441 i0 100 100.307692307692 156 0 100 0 1 156 966 811 Acanthamoeba castellanii strain ISC-UAH 163/15a 18S ribosomal RNA gene, partial sequence blastn 15648 289 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16649091 16649091 PRJEB48872_P_NODE_310974_length_279_cov_9.200000_g295162_i0 PRJEB48872 310974 279 9.2 25.668 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 427 3.65e-115   NTclustered gi|300078498|gb|GU001160.1| 5755 g295162 i0 93.814 18.9498207885305 291 6 100 10 1 279 6177 6467 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5287 427 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19198516 19198516 PRJEB48872_P_NODE_326236_length_269_cov_5.791304_g310424_i0 PRJEB48872 326236 269 5.791304 15.57860776 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 449 7.48e-122   NTclustered gi|300078498|gb|GU001160.1| 5755 g310424 i0 96.691 3.09665427509294 272 5 100 4 1 269 7038 6768 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 833 449 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28233419 28233419 PRJEB48872_P_NODE_574846_length_174_cov_1.466667_g559034_i0 PRJEB48872 574846 174 1.466667 2.55200058 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.1 1.8e-4   NR XP_004358093.1 1257118 g559034 i0 44.6 1.93103448275862 56 31 96.6 0 2 169 385 440 XP_004358093.1 uncharacterized protein ACA1_119480 [Acanthamoeba castellanii str. Neff] diamond 336 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;