RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB48218" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB48218 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
62569 62569 PRJEB48218_S_NODE_23341_length_184_cov_3.387097_g22379_i0 PRJEB48218 23341 184 3.387097 6.23225848 Polyangium aurulentum 2567896 Bacteria Bacteria 248 1.86e-61   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g22379 i0 91.209 126.233695652174 182 16 99 0 1 182 11728109 11728290 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 23227 248 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
2612722 2612722 PRJEB48218_S_NODE_7983_length_335_cov_12007.790850_g7021_i0 PRJEB48218 7983 335 12007.79085 40226.0993475 Chondromyces crocatus 52 Bacteria Bacteria 267 1.04e-66   NTclustered gi|169977285|emb|AM946600.1| 52 g7021 i0 88.991 414.680597014925 218 21 64 3 121 335 3199 2982 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 138918 267 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
28265085 28265085 PRJEB48218_S_NODE_22786_length_188_cov_2.509434_g21824_i0 PRJEB48218 22786 188 2.509434 4.71773592 Polyangiales bacterium 3034171 Bacteria Bacteria 67.8 2.17e-11   NR MET0286007.1 3034171 g21824 i0 55.9 4.75531914893617 59 26 94.1 0 4 180 208 266 MET0286007.1 efflux RND transporter periplasmic adaptor subunit [Polyangiales bacterium] diamond 894 67.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;