RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB48218" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB48218 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15018117 15018117 PRJEB48218_S_NODE_19492_length_213_cov_3.494565_g18530_i0 PRJEB48218 19492 213 3.494565 7.44342345 Gemmatirosa 1706036 Bacteria Bacteria 248 2.23e-61   NTclustered gi|2874253789|emb|OY969773.1| 412054 g18530 i0 90.155 95.8544600938967 193 15 90 4 23 213 421067 421257 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 20417 248 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16639448 16639448 PRJEB48218_S_NODE_29794_length_153_cov_2.677419_g28832_i0 PRJEB48218 29794 153 2.677419 4.09645107 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 174 2.56e-39   NTclustered gi|2874253789|emb|OY969773.1| 412054 g28832 i0 89.209 71.2418300653595 139 15 91 0 14 152 420906 420768 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 10900 174 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20463182 20463182 PRJEB48218_S_NODE_10057_length_286_cov_1138.961089_g9095_i0 PRJEB48218 10057 286 1138.961089 3257.42871454 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 270 6.7e-68   NTclustered gi|575456455|gb|CP007128.1| 861299 g9095 i0 92.553 295.43006993007 188 14 66 0 97 284 3042772 3042959 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 84493 270 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
31518967 31518967 PRJEB48218_S_NODE_9856_length_290_cov_4.114943_g8894_i0 PRJEB48218 9856 290 4.114943 11.9333347 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 140 2.3699999999999997e-37   NR HKR57138.1 2448054 g8894 i0 70.2 0.972413793103448 94 28 97.2 0 1 282 192 285 HKR57138.1 hypothetical protein [Gemmatimonadales bacterium] diamond 282 140 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;