RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJEB48218" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB48218 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14090946 14090946 PRJEB48218_S_NODE_25132_length_173_cov_2.368056_g24170_i0 PRJEB48218 25132 173 2.368056 4.09673688 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 172 1.07e-38   NTclustered gi|1474570736|gb|CP023991.1| 2026720 g24170 i0 85.714 9.71098265895954 168 18 95 5 10 173 883688 883853 Candidatus Saccharibacteria bacterium isolate CG19_WC_8_21_14_NA_150_51_44 chromosome, complete genome blastn 1680 172 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28423298 28423298 PRJEB48218_S_NODE_22906_length_187_cov_3.031646_g21944_i0 PRJEB48218 22906 187 3.031646 5.66917802 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 73.6 1.47e-14   NR MBQ3352378.1 2026720 g21944 i0 79.5 1.45989304812834 44 9 70.6 0 177 46 113 156 MBQ3352378.1 crossover junction endodeoxyribonuclease RuvC [Candidatus Saccharibacteria bacterium] diamond 273 73.6 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28517926 28517926 PRJEB48218_S_NODE_26747_length_165_cov_3.095588_g25785_i0 PRJEB48218 26747 165 3.095588 5.1077202 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 99 6.16e-23   NR MBH1956809.1 2026720 g25785 i0 87.3 1 55 7 100 0 165 1 194 248 MBH1956809.1 ribosome small subunit-dependent GTPase A [Candidatus Saccharibacteria bacterium] diamond 165 99 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28858380 28858380 PRJEB48218_S_NODE_13528_length_243_cov_3.364486_g12566_i0 PRJEB48218 13528 243 3.364486 8.17570098 Bacteria 2 Bacteria Bacteria 109 1.19e-25   NR HSX02626.1 2890869 g12566 i0 85.1 2.46913580246914 67 10 82.7 0 41 241 369 435 HSX02626.1 ABC transporter ATP-binding protein [Candidatus Saccharimonadia bacterium] diamond 600 109 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia       Candidatus Saccharimonadia bacterium
29244114 29244114 PRJEB48218_S_NODE_27769_length_161_cov_2.310606_g26807_i0 PRJEB48218 27769 161 2.310606 3.72007566 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 101 4.59e-25   NR MDB5159858.1 2026720 g26807 i0 88.7 0.987577639751553 53 6 98.8 0 3 161 84 136 MDB5159858.1 Sulfite oxidase-like oxidoreductase [Candidatus Saccharibacteria bacterium] diamond 159 101 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30128007 30128007 PRJEB48218_S_NODE_15592_length_234_cov_3.209756_g14630_i0 PRJEB48218 15592 234 3.209756 7.51082904 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 129 1.63e-33   NR HVX47950.1 2973664 g14630 i0 80.6 5.53846153846154 72 14 92.3 0 233 18 222 293 HVX47950.1 glutamate--tRNA ligase [Candidatus Saccharimonadales bacterium] diamond 1296 129 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
32846189 32846189 PRJEB48218_S_NODE_16580_length_230_cov_2.512438_g15618_i0 PRJEB48218 16580 230 2.512438 5.7786074 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 94 1.02e-21   NR HSX40841.1 2973664 g15618 i0 63.8 2.7 69 25 90 0 229 23 96 164 HSX40841.1 hypothetical protein [Candidatus Saccharimonadales bacterium] diamond 621 94 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;