contig_metadata
18 rows where bioproject = "PRJEB48218" and tax_phylum = "Acidobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62621 | 62621 | PRJEB48218_S_NODE_26181_length_168_cov_2.244604_g25219_i0 | PRJEB48218 | 26181 | 168 | 2.244604 | 3.77093472 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 198 | 1.7099999999999997e-46 | NTclustered | gi|2874253862|emb|OY969918.1| | 171953 | g25219 | i0 | 96.639 | 213.583333333333 | 119 | 4 | 71 | 0 | 50 | 168 | 2908804 | 2908922 | MAG: uncultured Acidobacteriota bacterium isolate MFD04967.bin.c.4 genome assembly, chromosome: 1 | blastn | 35882 | 198 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 62833 | 62833 | PRJEB48218_S_NODE_6981_length_370_cov_10751.023460_g6019_i0 | PRJEB48218 | 6981 | 370 | 10751.02346 | 39778.786802 | Terriglobia | 204432 | Bacteria | Bacteria | 170 | 1.5e-46 | NR | HEY1497794.1 | 2068625 | g6019 | i0 | 79.6 | 1.63783783783784 | 103 | 21 | 83.5 | 0 | 313 | 5 | 101 | 203 | HEY1497794.1 TonB-dependent receptor [Candidatus Solibacter sp.] | diamond | 606 | 170 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Bryobacterales | Solibacteraceae | Candidatus Solibacter | Candidatus Solibacter sp. | ||
| 3888633 | 3888633 | PRJEB48218_S_NODE_24524_length_176_cov_37.367347_g23562_i0 | PRJEB48218 | 24524 | 176 | 37.367347 | 65.76653072 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 206 | 1.08e-48 | NTclustered | gi|76574288|gb|DQ139436.1| | 171953 | g23562 | i0 | 93.478 | 20.5454545454545 | 138 | 9 | 78 | 0 | 16 | 153 | 138 | 1 | Uncultured Acidobacteria bacterium clone CAL6 23S ribosomal RNA gene, partial sequence | blastn | 3616 | 206 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 6440687 | 6440687 | PRJEB48218_S_NODE_24646_length_176_cov_1.816327_g23684_i0 | PRJEB48218 | 24646 | 176 | 1.816327 | 3.19673552 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 111 | 2.42e-20 | NTclustered | gi|2874254091|emb|OY970174.1| | 171953 | g23684 | i0 | 78.531 | 2.03409090909091 | 177 | 32 | 99 | 5 | 1 | 174 | 3943436 | 3943263 | MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 | blastn | 358 | 111 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 8989582 | 8989582 | PRJEB48218_S_NODE_19388_length_214_cov_2.005405_g18426_i0 | PRJEB48218 | 19388 | 214 | 2.005405 | 4.2915667 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 174 | 3.86e-39 | NTclustered | gi|2874253760|emb|OY969701.1| | 2283092 | g18426 | i0 | 81.659 | 8.36448598130841 | 229 | 24 | 100 | 13 | 1 | 214 | 3176838 | 3177063 | MAG: Pyrinomonadaceae bacterium isolate MFD04212.bin.c.1 genome assembly, chromosome: 1 | blastn | 1790 | 174 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium | |||
| 10265183 | 10265183 | PRJEB48218_S_NODE_11989_length_258_cov_5.179039_g11027_i0 | PRJEB48218 | 11989 | 258 | 5.179039 | 13.36192062 | uncultured Acidobacteriota bacterium | 171953 | Bacteria | Bacteria | 316 | 7.539999999999998e-82 | NTclustered | gi|217038899|gb|EU810989.1| | 171953 | g11027 | i0 | 91.453 | 121.031007751938 | 234 | 15 | 90 | 5 | 24 | 255 | 1 | 231 | Uncultured Acidobacteria bacterium clone 01QD9 23S ribosomal RNA gene, partial sequence | blastn | 31226 | 316 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | uncultured Acidobacteriota bacterium | ||||||
| 11540700 | 11540700 | PRJEB48218_S_NODE_20570_length_204_cov_10.057143_g19608_i0 | PRJEB48218 | 20570 | 204 | 10.057143 | 20.51657172 | Candidatus Solibacter usitatus | 332163 | Bacteria | Bacteria | 339 | 1.22e-88 | NTclustered | gi|470468228|ref|NR_076103.1| | 332163 | g19608 | i0 | 96.569 | 101.323529411765 | 204 | 7 | 100 | 0 | 1 | 204 | 738 | 941 | Candidatus Solibacter usitatus strain Ellin6076 23S ribosomal RNA gene, complete sequence | blastn | 20670 | 339 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Bryobacterales | Solibacteraceae | Candidatus Solibacter | Candidatus Solibacter usitatus | ||
| 16639616 | 16639616 | PRJEB48218_S_NODE_7834_length_340_cov_11759.463023_g6872_i0 | PRJEB48218 | 7834 | 340 | 11759.463023 | 39982.1742782 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 357 | 6.08e-94 | NTclustered | gi|1958085512|gb|CP065000.1| | 1978231 | g6872 | i0 | 95.133 | 240.808823529412 | 226 | 11 | 66 | 0 | 115 | 340 | 3301038 | 3300813 | Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome | blastn | 81875 | 357 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 17913958 | 17913958 | PRJEB48218_S_NODE_16535_length_230_cov_30.825871_g15573_i0 | PRJEB48218 | 16535 | 230 | 30.825871 | 70.8995033 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 233 | 6.83e-57 | NTclustered | gi|1958085512|gb|CP065000.1| | 1978231 | g15573 | i0 | 87.019 | 254.869565217391 | 208 | 26 | 90 | 1 | 24 | 230 | 3298163 | 3298370 | Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome | blastn | 58620 | 233 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 23014798 | 23014798 | PRJEB48218_S_NODE_7939_length_337_cov_3.159091_g6977_i0 | PRJEB48218 | 7939 | 337 | 3.159091 | 10.64613667 | Bryobacterales bacterium F-183 | 2802972 | Bacteria | Bacteria | 339 | 2.1799999999999997e-88 | NTclustered | gi|2131941663|dbj|AP025252.1| | 2802972 | g6977 | i0 | 87 | 171.908011869436 | 300 | 39 | 89 | 0 | 38 | 337 | 634712 | 635011 | Bryobacterales bacterium F-183 DNA, nearly complete genome | blastn | 57933 | 339 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Bryobacterales | Bryobacterales bacterium F-183 | ||||
| 24288244 | 24288244 | PRJEB48218_S_NODE_18980_length_217_cov_2.122340_g18018_i0 | PRJEB48218 | 18980 | 217 | 2.12234 | 4.6054778 | Mesoterricola sediminis | 2927980 | Bacteria | Bacteria | 128 | 3.1e-25 | NTclustered | gi|2490895851|dbj|AP027081.1| | 2927980 | g18018 | i0 | 81.212 | 1.50691244239631 | 165 | 25 | 75 | 6 | 56 | 217 | 3370766 | 3370927 | Mesoterricola sediminis W786 DNA, complete genome | blastn | 327 | 128 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Holophagae | Holophagales | Holophagaceae | Mesoterricola | Mesoterricola sediminis | ||
| 26970071 | 26970071 | PRJEB48218_S_NODE_24142_length_179_cov_2.306667_g23180_i0 | PRJEB48218 | 24142 | 179 | 2.306667 | 4.12893393 | Vicinamibacteria bacterium | 2793154 | Bacteria | Bacteria | 105 | 1.26e-24 | NR | MBX7184240.1 | 2793154 | g23180 | i0 | 92.9 | 1.87709497206704 | 56 | 4 | 93.9 | 0 | 173 | 6 | 397 | 452 | MBX7184240.1 CusA/CzcA family heavy metal efflux RND transporter [Vicinamibacteria bacterium] | diamond | 336 | 105 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Vicinamibacteria | Vicinamibacteria bacterium | |||||
| 27823415 | 27823415 | PRJEB48218_S_NODE_20464_length_205_cov_2.977273_g19502_i0 | PRJEB48218 | 20464 | 205 | 2.977273 | 6.10340965 | Candidatus Polarisedimenticolaceae bacterium | 2910585 | Bacteria | Bacteria | 42.7 | 0.0235 | NR | HEX5042409.1 | 2910585 | g19502 | i0 | 48 | 1.46341463414634 | 50 | 24 | 71.7 | 2 | 19 | 165 | 189 | 237 | HEX5042409.1 hypothetical protein [Candidatus Polarisedimenticolaceae bacterium] | diamond | 300 | 42.7 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Candidatus Polarisedimenticolia | Candidatus Polarisedimenticolales | Candidatus Polarisedimenticolaceae | Candidatus Polarisedimenticolaceae bacterium | |||
| 28044222 | 28044222 | PRJEB48218_S_NODE_24005_length_180_cov_2.066225_g23043_i0 | PRJEB48218 | 24005 | 180 | 2.066225 | 3.719205 | Terriglobia bacterium | 2081523 | Bacteria | Bacteria | 110 | 2.5100000000000004e-27 | NR | HLQ77968.1 | 2081523 | g23043 | i0 | 86.7 | 2 | 60 | 8 | 100 | 0 | 1 | 180 | 15 | 74 | HLQ77968.1 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO [Terriglobia bacterium] | diamond | 360 | 110 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobia bacterium | |||||
| 29086332 | 29086332 | PRJEB48218_S_NODE_23228_length_185_cov_2.641026_g22266_i0 | PRJEB48218 | 23228 | 185 | 2.641026 | 4.8858981 | Candidatus Acidiferrales bacterium | 2952895 | Bacteria | Bacteria | 130 | 1.58e-34 | NR | HVA96474.1 | 2952895 | g22266 | i0 | 88.5 | 0.989189189189189 | 61 | 7 | 98.9 | 0 | 2 | 184 | 116 | 176 | HVA96474.1 glycosyltransferase [Candidatus Acidiferrales bacterium] | diamond | 183 | 130 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Candidatus Acidiferrales | Candidatus Acidiferrales bacterium | ||||
| 31423903 | 31423903 | PRJEB48218_S_NODE_24116_length_179_cov_2.660000_g23154_i0 | PRJEB48218 | 24116 | 179 | 2.66 | 4.7614 | Bryobacteraceae bacterium | 2212468 | Bacteria | Bacteria | 46.2 | 5.85e-4 | NR | HET9319555.1 | 2212468 | g23154 | i0 | 62.9 | 0.58659217877095 | 35 | 11 | 55.3 | 1 | 74 | 172 | 54 | 88 | HET9319555.1 hypothetical protein [Bryobacteraceae bacterium] | diamond | 105 | 46.2 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Bryobacterales | Bryobacteraceae | Bryobacteraceae bacterium | |||
| 32056572 | 32056572 | PRJEB48218_S_NODE_28238_length_159_cov_2.238462_g27276_i0 | PRJEB48218 | 28238 | 159 | 2.238462 | 3.55915458 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 58.2 | 4.21e-8 | NR | HEX8459685.1 | 2283092 | g27276 | i0 | 47.1 | 0.962264150943396 | 51 | 27 | 96.2 | 0 | 2 | 154 | 50 | 100 | HEX8459685.1 ThiF family adenylyltransferase [Pyrinomonadaceae bacterium] | diamond | 153 | 58.2 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium | |||
| 32214910 | 32214910 | PRJEB48218_S_NODE_10498_length_279_cov_3.972000_g9536_i0 | PRJEB48218 | 10498 | 279 | 3.972 | 11.08188 | Candidatus Angelobacter sp. | 2976921 | Bacteria | Bacteria | 62.4 | 6.99e-9 | NR | HZJ34632.1 | 2976921 | g9536 | i0 | 66.7 | 0.580645161290323 | 54 | 18 | 58.1 | 0 | 27 | 188 | 443 | 496 | HZJ34632.1 hypothetical protein [Candidatus Angelobacter sp.] | diamond | 162 | 62.4 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Candidatus Angelobacter | Candidatus Angelobacter sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;