RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB48218", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB48218 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5164943 5164943 PRJEB48218_S_NODE_26285_length_167_cov_4.123188_g25323_i0 PRJEB48218 26285 167 4.123188 6.88572396 Poseidonibacter lekithochrous 1904463 Bacteria Bacteria 243 7.739999999999999e-60   NTclustered gi|1850313845|gb|CP054052.1| 1904463 g25323 i0 92.814 12.9341317365269 167 12 100 0 1 167 549342 549176 Poseidonibacter lekithochrous strain DSM 100870 chromosome, complete genome blastn 2160 243 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter lekithochrous
31297387 31297387 PRJEB48218_S_NODE_5315_length_465_cov_40.201835_g4365_i0 PRJEB48218 5315 465 40.201835 186.93853275 Helicobacter pylori 210 Bacteria Bacteria 100 1.06e-24   NR GAA9180441.1 210 g4365 i0 93.5 0.296774193548387 46 3 29.7 0 180 43 1 46 GAA9180441.1 hypothetical protein Kyoto193A_2360 [Helicobacter pylori] diamond 138 100 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;