RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

34 rows where bioproject = "PRJEB48218" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 34 ✖

bioproject 1

  • PRJEB48218 · 34 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
62679 62679 PRJEB48218_S_NODE_29641_length_154_cov_1.688000_g28679_i0 PRJEB48218 29641 154 1.688 2.59952 Sobemovirus LTSV 3432498 Viruses Viruses 279 5.33e-71   NTclustered gi|440214905|gb|JQ782213.1| 12470 g28679 i0 99.351 6 154 1 100 0 1 154 2778 2931 Lucerne transient streak virus isolate LTSV-Can, complete genome blastn 924 279 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales Solemoviridae Sobemovirus Sobemovirus LTSV
990313 990313 PRJEB48218_S_NODE_1721_length_1102_cov_4763.854613_g1248_i0 PRJEB48218 1721 1102 4763.854613 52497.67783526 root 1 Root_unresolved Root_unresolved 1818 0   NTclustered gi|49035250|gb|AF499686.2| 11292 g1248 i0 100 89.2078039927405 984 0 89 0 119 1102 1 984 Rabies virus strain SRV9, complete genome blastn 98307 1818 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
990354 990354 PRJEB48218_S_NODE_21_length_4256_cov_1060.348711_g2_i2 PRJEB48218 21 4256 1060.348711 45128.44114016 root 1 Root_unresolved Root_unresolved 7601 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i2 100 96.7105263157895 4116 0 97 0 141 4256 5338 9453 Rabies virus (strain SAD B19), complete genome blastn 411600 7601 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
990383 990383 PRJEB48218_S_NODE_2421_length_895_cov_6306.912240_g1781_i0 PRJEB48218 2421 895 6306.91224 56446.864548 root 1 Root_unresolved Root_unresolved 1434 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g1781 i0 100 87.6391061452514 776 0 87 0 120 895 1065 1840 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 78437 1434 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
4818368 4818368 PRJEB48218_S_NODE_4_length_6069_cov_1724.714570_g2_i0 PRJEB48218 4 6069 1724.71457 104672.9272533 root 1 Root_unresolved Root_unresolved 10990 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i0 100 98.0550337782172 5951 0 98 0 119 6069 11928 5978 Rabies virus (strain SAD B19), complete genome blastn 595096 10990 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
6093483 6093483 PRJEB48218_S_NODE_2425_length_894_cov_7349.035838_g1785_i0 PRJEB48218 2425 894 7349.035838 65700.38039172 root 1 Root_unresolved Root_unresolved 1434 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g1785 i0 100 87.7371364653244 776 0 87 0 1 776 1840 1065 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 78437 1434 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
6093577 6093577 PRJEB48218_S_NODE_45_length_3648_cov_2060.457309_g2_i4 PRJEB48218 45 3648 2060.457309 75165.48263232 root 1 Root_unresolved Root_unresolved 6519 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i4 100 96.765350877193 3530 0 97 0 119 3648 9507 5978 Rabies virus (strain SAD B19), complete genome blastn 353000 6519 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
6093607 6093607 PRJEB48218_S_NODE_5_length_6069_cov_1685.440894_g2_i1 PRJEB48218 5 6069 1685.440894 102289.40785686 root 1 Root_unresolved Root_unresolved 10868 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i1 99.63 98.0550337782172 5951 22 98 0 1 5951 5978 11928 Rabies virus (strain SAD B19), complete genome blastn 595096 10868 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
6440934 6440934 PRJEB48218_S_NODE_7526_length_351_cov_3.310559_g6564_i0 PRJEB48218 7526 351 3.310559 11.62006209 Potexvirus flavitrifolii 3433843 Viruses Viruses 562 1.2399999999999997e-155   NTclustered gi|2217161454|gb|OL584354.1| 12177 g6564 i0 96.736 11.9287749287749 337 11 96 0 1 337 6679 7015 Clover yellow mosaic virus isolate DSMZ PV-0851 genomic sequence blastn 4187 562 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
8643551 8643551 PRJEB48218_S_NODE_3107_length_733_cov_8706.075284_g2338_i0 PRJEB48218 3107 733 8706.075284 63815.53183172 root 1 Root_unresolved Root_unresolved 1138 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g2338 i0 100 85.1800818553888 616 0 84 0 118 733 1225 1840 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 62437 1138 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
8643573 8643573 PRJEB48218_S_NODE_47_length_3626_cov_1092.144287_g2_i5 PRJEB48218 47 3626 1092.144287 39601.15184662 root 1 Root_unresolved Root_unresolved 6519 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i5 100 97.3524544953116 3530 0 97 0 1 3530 5978 9507 Rabies virus (strain SAD B19), complete genome blastn 353000 6519 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
8989775 8989775 PRJEB48218_S_NODE_29328_length_155_cov_1.952381_g28366_i0 PRJEB48218 29328 155 1.952381 3.02619055 Potexvirus trifolii 3433859 Viruses Viruses 226 7.1e-55   NTclustered gi|1843793411|gb|MN399740.1| 12188 g28366 i0 92.903 9.92258064516129 155 11 100 0 1 155 2151 1997 White clover mosaic virus isolate Muenster_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 1538 226 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
9918635 9918635 PRJEB48218_S_NODE_3188_length_719_cov_8637.949275_g2409_i0 PRJEB48218 3188 719 8637.949275 62106.85528725 root 1 Root_unresolved Root_unresolved 1112 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g2409 i0 100 84.8915159944367 602 0 84 0 1 602 1840 1239 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 61037 1112 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
9918668 9918668 PRJEB48218_S_NODE_48_length_3594_cov_2032.106311_g2_i6 PRJEB48218 48 3594 2032.106311 73033.90081734 root 1 Root_unresolved Root_unresolved 6420 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i6 100 96.7167501391208 3476 0 97 0 1 3476 5978 9453 Rabies virus (strain SAD B19), complete genome blastn 347600 6420 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
11193819 11193819 PRJEB48218_S_NODE_49_length_3590_cov_2036.661331_g2_i7 PRJEB48218 49 3590 2036.661331 73116.1417829 root 1 Root_unresolved Root_unresolved 6420 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i7 100 96.8245125348189 3476 0 97 0 1 3476 9453 5978 Rabies virus (strain SAD B19), complete genome blastn 347600 6420 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
11193843 11193843 PRJEB48218_S_NODE_6269_length_403_cov_13582.363636_g5308_i0 PRJEB48218 6269 403 13582.363636 54736.92545308 root 1 Root_unresolved Root_unresolved 527 5.269999999999998e-145   NTclustered gi|930191918|emb|LN713651.1| 11292 g5308 i0 100 70.7196029776675 285 0 71 0 1 285 1882 1598 Rabies virus complete genome, isolate sadP588_5_var01 blastn 28500 527 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
12469361 12469361 PRJEB48218_S_NODE_2070_length_990_cov_5378.795005_g1248_i1 PRJEB48218 2070 990 5378.795005 53250.0705495 root 1 Root_unresolved Root_unresolved 1613 0   NTclustered gi|930191834|emb|LN713637.1| 11292 g1248 i1 100 88.1818181818182 873 0 88 0 1 873 966 94 Rabies virus complete genome, isolate sadLysvulpen0609_2_var01 blastn 87300 1613 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
12816215 12816215 PRJEB48218_S_NODE_5771_length_431_cov_9451.810945_g4816_i0 PRJEB48218 5771 431 9451.810945 40737.30517295 Potexvirus flavitrifolii 3433843 Viruses Viruses 529 1.5799999999999993e-145   NTclustered gi|9629178|ref|NC_001753.1| 12177 g4816 i0 97.125 189.969837587007 313 9 73 0 1 313 313 1 Clover yellow mosaic virus, complete genome blastn 81877 529 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
15018119 15018119 PRJEB48218_S_NODE_1952_length_1026_cov_6906.248746_g1431_i0 PRJEB48218 1952 1026 6906.248746 70858.11213396 root 1 Root_unresolved Root_unresolved 1679 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g1431 i0 100 89.4122807017544 909 0 89 0 1 909 1840 932 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 91737 1679 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
15018124 15018124 PRJEB48218_S_NODE_2032_length_1005_cov_3465.394467_g1487_i0 PRJEB48218 2032 1005 3465.394467 34827.21439335 root 1 Root_unresolved Root_unresolved 1679 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g1487 i0 100 91.2805970149254 909 0 90 0 97 1005 932 1840 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 91737 1679 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
15018264 15018264 PRJEB48218_S_NODE_32_length_3972_cov_1084.240426_g2_i3 PRJEB48218 32 3972 1084.240426 43066.02972072 root 1 Root_unresolved Root_unresolved 7101 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i3 99.742 97.5579053373615 3875 10 98 0 98 3972 9852 5978 Rabies virus (strain SAD B19), complete genome blastn 387500 7101 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
15018297 15018297 PRJEB48218_S_NODE_52_length_3572_cov_1087.272933_g2_i8 PRJEB48218 52 3572 1087.272933 38837.38916676 root 1 Root_unresolved Root_unresolved 6420 0   NTclustered gi|333556|gb|M31046.1|RAVCGA 11292 g2 i8 100 97.3124300111982 3476 0 97 0 97 3572 9453 5978 Rabies virus (strain SAD B19), complete genome blastn 347600 6420 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
16293140 16293140 PRJEB48218_S_NODE_3233_length_712_cov_3858.891654_g2445_i0 PRJEB48218 3233 712 3858.891654 27475.30857648 root 1 Root_unresolved Root_unresolved 1138 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g2445 i0 100 87.6924157303371 616 0 87 0 97 712 1225 1840 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 62437 1138 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
16293207 16293207 PRJEB48218_S_NODE_7913_length_337_cov_13026.071429_g6951_i0 PRJEB48218 7913 337 13026.071429 43897.86071573 root 1 Root_unresolved Root_unresolved 228 4.919999999999999e-55   NTclustered gi|930191696|emb|LN713614.1| 11292 g6951 i0 100 36.4985163204748 123 0 36 0 119 241 11918 11796 Rabies virus complete genome, isolate sadBernO_2_var03 blastn 12300 228 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
17568114 17568114 PRJEB48218_S_NODE_2134_length_969_cov_1772.126596_g1248_i2 PRJEB48218 2134 969 1772.126596 17171.90671524 root 1 Root_unresolved Root_unresolved 1613 0   NTclustered gi|930191834|emb|LN713637.1| 11292 g1248 i2 100 90.0928792569659 873 0 90 0 97 969 94 966 Rabies virus complete genome, isolate sadLysvulpen0609_2_var01 blastn 87300 1613 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
17568267 17568267 PRJEB48218_S_NODE_5754_length_433_cov_4685.519802_g4799_i0 PRJEB48218 5754 433 4685.519802 20288.30074266 root 1 Root_unresolved Root_unresolved 758 0   NTclustered gi|930191918|emb|LN713651.1| 11292 g4799 i0 100 95.3533487297921 410 0 95 0 24 433 1473 1882 Rabies virus complete genome, isolate sadP588_5_var01 blastn 41288 758 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
20116967 20116967 PRJEB48218_S_NODE_3096_length_735_cov_7331.184136_g2328_i0 PRJEB48218 3096 735 7331.184136 53884.2033996 root 1 Root_unresolved Root_unresolved 1138 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g2328 i0 99.838 85.356462585034 619 1 84 0 117 735 1222 1840 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 62737 1138 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
20463291 20463291 PRJEB48218_S_NODE_16077_length_232_cov_1.822660_g15115_i0 PRJEB48218 16077 232 1.82266 4.2285712 Potexvirus trifolii 3433859 Viruses Viruses 366 6.52e-97   NTclustered gi|61317|emb|X06728.1| 12188 g15115 i0 97.222 18.2025862068966 216 6 93 0 17 232 2484 2699 Potexvirus white clover mosaic virus (WC1MV) RNA genome blastn 4223 366 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
21392544 21392544 PRJEB48218_S_NODE_6297_length_402_cov_13237.970509_g5336_i0 PRJEB48218 6297 402 13237.970509 53216.64144618 root 1 Root_unresolved Root_unresolved 527 5.249999999999998e-145   NTclustered gi|930191918|emb|LN713651.1| 11292 g5336 i0 100 70.8955223880597 285 0 71 0 118 402 1598 1882 Rabies virus complete genome, isolate sadP588_5_var01 blastn 28500 527 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
21739503 21739503 PRJEB48218_S_NODE_7758_length_343_cov_3.073248_g6796_i0 PRJEB48218 7758 343 3.073248 10.54124064 Potexvirus trifolii 3433859 Viruses Viruses 599 9.239999999999999e-167   NTclustered gi|1843793429|gb|MN399743.1| 12188 g6796 i0 99.394 22.1195335276968 330 2 96 0 14 343 632 303 White clover mosaic virus isolate Landkreis Rostock_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 7587 599 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
22667227 22667227 PRJEB48218_S_NODE_2258_length_939_cov_3482.207692_g1652_i0 PRJEB48218 2258 939 3482.207692 32697.93022788 root 1 Root_unresolved Root_unresolved 1735 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g1652 i0 100 100.891373801917 939 0 100 0 1 939 902 1840 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 94737 1735 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
23942815 23942815 PRJEB48218_S_NODE_7399_length_354_cov_12985.673846_g6437_i0 PRJEB48218 7399 354 12985.673846 45969.28541484 root 1 Root_unresolved Root_unresolved 438 2.2000000000000003e-118   NTclustered gi|930191696|emb|LN713614.1| 11292 g6437 i0 100 66.9491525423729 237 0 67 0 1 237 974 738 Rabies virus complete genome, isolate sadBernO_2_var03 blastn 23700 438 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
23942825 23942825 PRJEB48218_S_NODE_8059_length_333_cov_2283.934211_g7097_i0 PRJEB48218 8059 333 2283.934211 7605.50092263 root 1 Root_unresolved Root_unresolved 438 2.06e-118   NTclustered gi|930191696|emb|LN713614.1| 11292 g7097 i0 100 71.1711711711712 237 0 71 0 1 237 974 738 Rabies virus complete genome, isolate sadBernO_2_var03 blastn 23700 438 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies
25216558 25216558 PRJEB48218_S_NODE_3320_length_698_cov_3879.934230_g2517_i0 PRJEB48218 3320 698 3879.93423 27081.9409254 root 1 Root_unresolved Root_unresolved 1112 0   NTclustered gi|1708261373|gb|MK111079.1| 11292 g2517 i0 100 87.445558739255 602 0 86 0 97 698 1239 1840 Lyssavirus rabies strain Lysvulpen 6321, complete genome blastn 61037 1112 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Lyssavirus Lyssavirus rabies

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;