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contig_metadata

14 rows where bioproject = "PRJEB48218" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 14 ✖

bioproject 1

  • PRJEB48218 · 14 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4818148 4818148 PRJEB48218_S_NODE_12764_length_249_cov_1320.263636_g11802_i0 PRJEB48218 12764 249 1320.263636 3287.45645364 Trebouxia 13786 Plants Plants 255 1.6e-63   NTclustered gi|1273623725|gb|KY033354.1| 285713 g11802 i0 96.178 324.204819277108 157 5 63 1 1 157 6661 6816 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 80727 255 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
7714739 7714739 PRJEB48218_S_NODE_12127_length_256_cov_1246.224670_g11165_i0 PRJEB48218 12127 256 1246.22467 3190.3351552 Micractinium reisseri 532145 Plants Plants 268 2.1199999999999998e-67   NTclustered gi|297501471|dbj|AB506071.1| 532145 g11165 i0 96.875 295.25390625 160 5 63 0 1 160 4716 4875 Micractinium reisseri genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: 2 blastn 75585 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium reisseri
7714757 7714757 PRJEB48218_S_NODE_13227_length_245_cov_15.296296_g12265_i0 PRJEB48218 13227 245 15.296296 37.4759252 Scherffelia dubia 3190 Plants Plants 185 2.09e-42   NTclustered gi|371782096|emb|HE610128.1| 3190 g12265 i0 80.992 83.2204081632653 242 39 98 7 7 245 2805 2568 Scherffelia dubia 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 17.86 blastn 20389 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
8989587 8989587 PRJEB48218_S_NODE_19568_length_212_cov_39.972678_g18606_i0 PRJEB48218 19568 212 39.972678 84.74207736 Koliella longiseta 33092 Plants Plants 346 7.64e-91   NTclustered gi|371782094|emb|HE610126.1| 33092 g18606 i0 98.469 93.0047169811321 196 3 92 0 1 196 4494 4689 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 19717 346 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
8989880 8989880 PRJEB48218_S_NODE_5848_length_425_cov_9961.962121_g4892_i0 PRJEB48218 5848 425 9961.962121 42338.33901425 Diplosphaera sp. (in: green algae) 2911680 Plants Plants 368 3.58e-97   NTclustered gi|2644500050|gb|PP079688.1| 2911680 g4892 i0 98.104 49.7058823529412 211 4 50 0 119 329 1518 1728 Diplosphaera sp. (in: green algae) isolate C3 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21125 368 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sp. (in: green algae)
9918445 9918445 PRJEB48218_S_NODE_13088_length_246_cov_21.147465_g12126_i0 PRJEB48218 13088 246 21.147465 52.0227639 Trebouxiophyceae 75966 Plants Plants 344 3.27e-90   NTclustered gi|371782094|emb|HE610126.1| 33092 g12126 i0 91.903 100.113821138211 247 19 100 1 1 246 4740 4494 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 24628 344 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
9918550 9918550 PRJEB48218_S_NODE_24348_length_177_cov_34.939189_g23386_i0 PRJEB48218 24348 177 34.939189 61.84236453 Chlorophyta 3041 Plants Plants 279 6.3e-71   NTclustered gi|1799637080|gb|MN968346.1| 29647 g23386 i0 98.726 88.7005649717514 157 2 89 0 3 159 1531 1375 Stichococcus sp. strain USMFM_Antarctica 2 small subunit ribosomal RNA gene, partial sequence blastn 15700 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
10265345 10265345 PRJEB48218_S_NODE_23149_length_185_cov_11.134615_g22187_i0 PRJEB48218 23149 185 11.134615 20.59903775 Stichococcus bacillaris 37433 Plants Plants 272 1.11e-68   NTclustered gi|371782093|emb|HE610125.1| 37433 g22187 i0 98.693 82.8054054054054 153 2 83 0 25 177 4289 4137 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 15319 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
11541105 11541105 PRJEB48218_S_NODE_9910_length_289_cov_27.080769_g8948_i0 PRJEB48218 9910 289 27.080769 78.26342241 Stichococcus bacillaris 37433 Plants Plants 424 4.9199999999999996e-114   NTclustered gi|18642518|gb|AF278751.1| 37433 g8948 i0 93.662 98.1038062283737 284 17 98 1 7 289 259 542 Stichococcus bacillaris 16S small subunit ribosomal RNA gene, partial sequence; chloroplast gene for chloroplast product blastn 28352 424 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
12469569 12469569 PRJEB48218_S_NODE_9470_length_297_cov_1092.529851_g8508_i0 PRJEB48218 9470 297 1092.529851 3244.81365747 Trebouxiophyceae 75966 Plants Plants 272 1.9499999999999993e-68   NTclustered gi|371782094|emb|HE610126.1| 33092 g8508 i0 91.045 68.8619528619529 201 18 68 0 97 297 4942 4742 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 20452 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
15365089 15365089 PRJEB48218_S_NODE_8973_length_308_cov_13151.358423_g8011_i0 PRJEB48218 8973 308 13151.358423 40506.18394284 Diplosphaera sundellii 3135960 Plants Plants 292 1.5599999999999999e-74   NTclustered gi|2878821371|gb|PQ563290.1| 3135960 g8011 i0 94.681 58.2987012987013 188 10 61 0 2 189 9010 8823 Diplosphaera sundellii mitochondrion, complete genome blastn 17956 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sundellii
16639636 16639636 PRJEB48218_S_NODE_8794_length_313_cov_6.183099_g7832_i0 PRJEB48218 8794 313 6.183099 19.35309987 Stichococcus bacillaris 37433 Plants Plants 374 5.5e-99   NTclustered gi|371782093|emb|HE610125.1| 37433 g7832 i0 89.073 92.6996805111821 302 31 96 1 5 304 3503 3202 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 29015 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
18841910 18841910 PRJEB48218_S_NODE_12475_length_252_cov_1295.614350_g11513_i0 PRJEB48218 12475 252 1295.61435 3264.948162 Trebouxiophyceae 75966 Plants Plants 289 1.6e-73   NTclustered gi|1799637079|gb|MN968320.1| 29647 g11513 i0 100 61.9087301587302 156 0 62 0 1 156 1221 1376 Stichococcus sp. strain CCAP 822/3 small subunit ribosomal RNA gene, partial sequence blastn 15601 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
19188284 19188284 PRJEB48218_S_NODE_6216_length_406_cov_11091.697613_g5256_i0 PRJEB48218 6216 406 11091.697613 45032.29230878 Stichococcus bacillaris 37433 Plants Plants 331 4.47e-86   NTclustered gi|371782093|emb|HE610125.1| 37433 g5256 i0 98.404 391.748768472906 188 3 46 0 102 289 7179 6992 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 159050 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;