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contig_metadata

5 rows where bioproject = "PRJEB48218" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB48218 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2265639 2265639 PRJEB48218_S_NODE_28342_length_158_cov_5.341085_g27380_i0 PRJEB48218 28342 158 5.341085 8.4389143 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 254 3.3400000000000003e-63   NTclustered gi|2703611740|gb|PP531597.1| 162098 g27380 i0 95.57 99.8164556962025 158 7 100 0 1 158 894 1051 Peronospora myosotidis voucher GLM-F73872 large subunit ribosomal RNA gene, partial sequence blastn 15771 254 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora myosotidis
3540852 3540852 PRJEB48218_S_NODE_21663_length_196_cov_517.616766_g20701_i0 PRJEB48218 21663 196 517.616766 1014.52886136 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 324 3.25e-84   NTclustered gi|1812798919|gb|MT119182.1| 439317 g20701 i0 97.368 99.9387755102041 190 5 97 0 1 190 194 5 Gambierdiscus australes isolate IRTACC194 large subunit ribosomal RNA gene, partial sequence blastn 19588 324 1 Eukaryota Sar     Dinophyceae Gonyaulacales Pyrocystaceae Gambierdiscus Gambierdiscus australes
7715071 7715071 PRJEB48218_S_NODE_4567_length_536_cov_6.086785_g3639_i0 PRJEB48218 4567 536 6.086785 32.6251676 Torodinium robustum 1641413 SAR_Eukaryotes SAR_Eukaryotes 63.9 2.43e-5   NTclustered gi|2630987758|gb|OR921549.1| 1641413 g3639 i0 100 0.0634328358208955 34 0 6 0 17 50 1727 1694 Torodinium robustum isolate Tro-QI4 small subunit ribosomal RNA gene, partial sequence blastn 34 63.9 1 Eukaryota Sar     Dinophyceae Torodiniales Torodiniaceae Torodinium Torodinium robustum
8643627 8643627 PRJEB48218_S_NODE_8467_length_321_cov_13092.691781_g7505_i0 PRJEB48218 8467 321 13092.691781 42027.54061701 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 320 7.48e-83   NTclustered gi|291495415|gb|GU823042.1| 152704 g7505 i0 96.392 60.4361370716511 194 7 60 0 19 212 786 979 Uncultured stramenopile clone A95F13RM1H08 18S ribosomal RNA gene, partial sequence blastn 19400 320 1 Eukaryota Sar             uncultured stramenopile
17914126 17914126 PRJEB48218_S_NODE_26535_length_166_cov_2.905109_g25573_i0 PRJEB48218 26535 166 2.905109 4.82248094 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 267 4.559999999999999e-67   NTclustered gi|2651357791|gb|PP174306.1| 41631 g25573 i0 95.783 82.2650602409639 166 6 100 1 1 166 3674 3510 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13656 267 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;