RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB48218", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJEB48218 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18841887 18841887 PRJEB48218_S_NODE_10495_length_279_cov_4.360000_g9533_i0 PRJEB48218 10495 279 4.36 12.1644 Metazoa 33208 Nematoda Nematoda 121 6.94e-23   NTclustered gi|157431636|gb|AY602177.2| 35559 g9533 i0 91.111 31.6487455197133 90 6 32 2 8 96 1912 1824 Rhabditella axei strain DF5006 28S large subunit ribosomal RNA gene, partial sequence blastn 8830 122 0.991803278688525 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditella Rhabditella axei
20116767 20116767 PRJEB48218_S_NODE_10756_length_275_cov_6.121951_g9794_i0 PRJEB48218 10756 275 6.121951 16.83536525 Metazoa 33208 Nematoda Nematoda 121 6.83e-23   NTclustered gi|48869073|gb|AY602170.1| 281685 g9794 i0 91.86 31.3054545454545 86 7 31 0 8 93 1919 1834 Caenorhabditis sp. SB341 28S large subunit ribosomal RNA gene, partial sequence blastn 8609 121 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis sp. SB341

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;