RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB48218", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB48218 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29023395 29023395 PRJEB48218_S_NODE_13668_length_242_cov_3.046948_g12706_i0 PRJEB48218 13668 242 3.046948 7.37361416 Fibrobacterota bacterium 2052160 Bacteria Bacteria 94.4 8.02e-21   NR MDB5046946.1 2052160 g12706 i0 63.5 0.91735537190082606 74 25 91.7 1 233 12 2 73 MDB5046946.1 hypothetical protein [Fibrobacterota bacterium] diamond 222 94.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31708592 31708592 PRJEB48218_S_NODE_24797_length_175_cov_2.102740_g23835_i0 PRJEB48218 24797 175 2.10274 3.679795 Fibrobacteria bacterium 2725311 Bacteria Bacteria 99.8 1.02e-22   NR MEO7427096.1 2725311 g23835 i0 82.5 0.977142857142857 57 10 97.7 0 1 171 368 424 MEO7427096.1 tRNA lysidine(34) synthetase TilS [Fibrobacteria bacterium] diamond 171 99.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;