RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB48218", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Doudnaibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Doudnaibacteriota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJEB48218 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30507478 30507478 PRJEB48218_S_NODE_13773_length_241_cov_1.679245_g12811_i0 PRJEB48218 13773 241 1.679245 4.04698045 Candidatus Doudnabacteria bacterium RIFCSPLOWO2_12_FULL_42_9 1817848 Bacteria Bacteria 130 4.05e-34   NR OGE98744.1 1817848 g12811 i0 84 0.933609958506224 75 12 93.4 0 227 3 183 257 OGE98744.1 MAG: hypothetical protein A3G89_03745 [Candidatus Doudnabacteria bacterium RIFCSPLOWO2_12_FULL_42_9] diamond 225 130 1 Bacteria Bacteria candidate phyla   Candidatus Doudnaibacteriota         Candidatus Doudnabacteria bacterium RIFCSPLOWO2_12_FULL_42_9
30696885 30696885 PRJEB48218_S_NODE_21754_length_196_cov_2.011976_g20792_i0 PRJEB48218 21754 196 2.011976 3.94347296 Candidatus Doudnabacteria bacterium 2052150 Bacteria Bacteria 71.6 1.31e-13   NR MBX4186679.1 2052150 g20792 i0 70.2 0.719387755102041 47 14 71.9 0 194 54 117 163 MBX4186679.1 serine--tRNA ligase [Candidatus Doudnabacteria bacterium] diamond 141 71.6 1 Bacteria Bacteria candidate phyla   Candidatus Doudnaibacteriota         Candidatus Doudnabacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;