contig_metadata
10 rows where bioproject = "PRJEB4632" and tax_phylum = "Myxococcota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2265284 | 2265284 | PRJEB4632_P_NODE_522_length_308_cov_1.404255_g484_i0 | PRJEB4632 | 522 | 308 | 1.404255 | 4.3251054 | root | 1 | Root_unresolved | Root_unresolved | 320 | 7.14e-83 | NTclustered | gi|2698055994|gb|CP089982.1| | 2905690 | g484 | i0 | 85.437 | 234.516233766234 | 309 | 43 | 100 | 2 | 1 | 308 | 9037910 | 9038217 | Pendulispora brunnea strain MSr12523 chromosome, complete genome | blastn | 72231 | 320 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Pendulisporaceae | Pendulispora | Pendulispora brunnea | ||
| 4817903 | 4817903 | PRJEB4632_P_NODE_124_length_744_cov_4.818182_g88_i0 | PRJEB4632 | 124 | 744 | 4.818182 | 35.84727408 | Sorangium | 39643 | Bacteria | Bacteria | 976 | 0 | NTclustered | gi|1566478966|gb|CP012672.1| | 56 | g88 | i0 | 90.349 | 132.638440860215 | 746 | 69 | 100 | 3 | 1 | 744 | 3690916 | 3690172 | Sorangium cellulosum strain So ce836 chromosome, complete genome | blastn | 98683 | 976 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 12469117 | 12469117 | PRJEB4632_P_NODE_270_length_454_cov_2.960630_g232_i0 | PRJEB4632 | 270 | 454 | 2.96063 | 13.4412602 | root | 1 | Root_unresolved | Root_unresolved | 488 | 2.8299999999999995e-133 | NTclustered | gi|1566495190|gb|CP012670.1| | 56 | g232 | i0 | 86.334 | 112.735682819383 | 461 | 48 | 100 | 14 | 1 | 454 | 4849288 | 4849740 | Sorangium cellulosum strain So ceGT47 chromosome, complete genome | blastn | 51182 | 488 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 15363790 | 15363790 | PRJEB4632_P_NODE_473_length_321_cov_2.975806_g435_i0 | PRJEB4632 | 473 | 321 | 2.975806 | 9.55233726 | Labilithrix luteola | 1391654 | Bacteria | Bacteria | 544 | 4.08e-150 | NTclustered | gi|913610804|gb|CP012333.1| | 1391654 | g435 | i0 | 97.196 | 146.230529595016 | 321 | 9 | 100 | 0 | 1 | 321 | 3944268 | 3943948 | Labilithrix luteola strain DSM 27648, complete genome | blastn | 46940 | 544 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Labilitrichaceae | Labilithrix | Labilithrix luteola | |||
| 17913100 | 17913100 | PRJEB4632_P_NODE_955_length_243_cov_0.900000_g917_i0 | PRJEB4632 | 955 | 243 | 0.9 | 2.187 | Deltaproteobacteria bacterium | 2026735 | Bacteria | Bacteria | 185 | 2.0699999999999998e-42 | NTclustered | gi|1958031866|gb|CP064976.1| | 2026735 | g917 | i0 | 80.992 | 159.827160493827 | 242 | 38 | 99 | 3 | 1 | 241 | 2385083 | 2384849 | MAG: Deltaproteobacteria bacterium isolate EsbW_18-Q3-R4-48_MAXAC.279_cln chromosome, complete genome | blastn | 38838 | 185 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Deltaproteobacteria bacterium | |||||
| 18841717 | 18841717 | PRJEB4632_P_NODE_255_length_469_cov_3.189394_g217_i0 | PRJEB4632 | 255 | 469 | 3.189394 | 14.95825786 | Sorangium | 39643 | Bacteria | Bacteria | 549 | 1.3299999999999994e-151 | NTclustered | gi|1566478966|gb|CP012672.1| | 56 | g217 | i0 | 87.949 | 143.944562899787 | 473 | 47 | 99 | 8 | 2 | 469 | 11965275 | 11964808 | Sorangium cellulosum strain So ce836 chromosome, complete genome | blastn | 67510 | 549 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 20116595 | 20116595 | PRJEB4632_P_NODE_976_length_242_cov_0.911243_g938_i0 | PRJEB4632 | 976 | 242 | 0.911243 | 2.20520806 | Sorangium | 39643 | Bacteria | Bacteria | 281 | 2.55e-71 | NTclustered | gi|1566478966|gb|CP012672.1| | 56 | g938 | i0 | 87.967 | 32.9049586776859 | 241 | 26 | 99 | 3 | 1 | 240 | 11963879 | 11964117 | Sorangium cellulosum strain So ce836 chromosome, complete genome | blastn | 7963 | 281 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 21738287 | 21738287 | PRJEB4632_P_NODE_338_length_393_cov_3.553125_g300_i0 | PRJEB4632 | 338 | 393 | 3.553125 | 13.96378125 | Labilithrix luteola | 1391654 | Bacteria | Bacteria | 555 | 2.3499999999999994e-153 | NTclustered | gi|913610804|gb|CP012333.1| | 1391654 | g300 | i0 | 92.112 | 175.880407124682 | 393 | 31 | 100 | 0 | 1 | 393 | 3944268 | 3943876 | Labilithrix luteola strain DSM 27648, complete genome | blastn | 69121 | 555 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Labilitrichaceae | Labilithrix | Labilithrix luteola | |||
| 22666946 | 22666946 | PRJEB4632_P_NODE_998_length_238_cov_2.387879_g960_i0 | PRJEB4632 | 998 | 238 | 2.387879 | 5.68315202 | Sorangium | 39643 | Bacteria | Bacteria | 248 | 2.54e-61 | NTclustered | gi|507148211|ref|NR_103018.1| | 56 | g960 | i0 | 87.215 | 51.7142857142857 | 219 | 26 | 91 | 1 | 22 | 238 | 1556 | 1774 | Sorangium cellulosum strain So ce 56 23S ribosomal RNA gene, complete sequence | blastn | 12308 | 248 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 30033601 | 30033601 | PRJEB4632_P_NODE_951_length_243_cov_0.905882_g913_i0 | PRJEB4632 | 951 | 243 | 0.905882 | 2.20129326 | Polyangiaceae bacterium | 2268199 | Bacteria | Bacteria | 58.2 | 1.31e-7 | NR | NOU34320.1 | 2268199 | g913 | i0 | 56.3 | 0.592592592592593 | 48 | 21 | 59.3 | 0 | 80 | 223 | 361 | 408 | NOU34320.1 hypothetical protein [Polyangiaceae bacterium] | diamond | 144 | 58.2 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Polyangiaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;