RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB4632", tax_phylum = "Fibrobacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB4632 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3887690 3887690 PRJEB4632_P_NODE_804_length_249_cov_2.335227_g766_i0 PRJEB4632 804 249 2.335227 5.81471523 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 261 3.44e-65   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g766 i0 85.887 149.835341365462 248 31 99 4 1 246 1594936 1595181 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 37309 261 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
15363788 15363788 PRJEB4632_P_NODE_393_length_353_cov_1.567857_g355_i0 PRJEB4632 393 353 1.567857 5.53453521 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 327 4.9499999999999993e-85   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g355 i0 87.031 14.3456090651558 293 35 82 3 14 304 1595465 1595174 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 5064 327 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
23013529 23013529 PRJEB4632_P_NODE_1039_length_228_cov_3.251613_g1001_i0 PRJEB4632 1039 228 3.251613 7.41367764 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 296 8.5e-76   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g1001 i0 90 825.162280701754 230 21 100 2 1 228 1596832 1596603 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 188137 296 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;